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See detailAutomated multimodal volume registration based on supervised 3D anatomical landmark detection
Vandaele, Rémy; LALLEMAND, François; MARTINIVE, Philippe; GULYBAN, Akos; JODOGNE, Sébastien; COUCKE, Philippe; Geurts, Pierre; Marée, Raphaël

in SCITEPRESS Digital Library (in press)

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See detailThe need for careful data collection for pattern recognition in digital pathology
Marée, Raphaël

in Journal of Pathology Informatics (2017)

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See detailSLDC: an open-source workflow for object detection in multi-gigapixel images
Mormont, Romain; Begon, Jean-Michel; Hoyoux, Renaud; Marée, Raphaël

Conference (2016, September 12)

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See detailCollaborative analysis of multi-gigapixel imaging data using Cytomine
Marée, Raphaël; Rollus, Loïc; Stévens, Benjamin; Hoyoux, Renaud; Louppe, Gilles; Vandaele, Rémy; Begon, Jean-Michel; Kainz, Philipp; Geurts, Pierre; Wehenkel, Louis

in Bioinformatics (2016)

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See detailTowards Generic Image Classification using Tree-based Learning: an Extensive Empirical Study
Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

in Pattern Recognition Letters (2016)

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See detailAn approach for detection of glomeruli in multisite digital pathology
Marée, Raphaël; Olivo-Marin, Jean-Christophe; Meas-Yedid, Vannary

in Proceedings International Symposium on Biomedical Imaging (2016)

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See detailConduire un projet techno-pédagogique avec trois universités francophones belges
Vincke, Grégoire; Marée, Raphaël; Wehenkel, Louis; Defaweux, Valérie; Quatresooz, Pascale; D'Haene, Nicky; Salmon, Isabelle; Renard, Patricia; Depiereux, Eric; Snoeck, Céline; Denis, Brigitte; Verpoorten, Dominique

Poster (2015, November 10)

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See detailDétection automatique de glomérules en pathologie digitale
Marée, Raphaël; Jean-Christophe, Olivo-Marin; Vannary, Meas-Yedid

Scientific conference (2015, September 08)

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See detailAutomated Landmark Detection For Rigid Registration Between The Simulation-CT and the Treatment CBCT
Vandaele, Rémy; Marée, Raphaël; COUCKE, Philippe; GULYBAN, Akos; LALLEMAND, François; Geurts, Pierre; JODOGNE, Sébastien; MARTINIVE, Philippe

Poster (2015, April)

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See detailActivation of the calcium-sensing receptor before renal ischemia/reperfusion exacerbates kidney injury
WEEKERS, Laurent; De Tullio, Pascal; BOVY, Christophe; Poma, Laurence; Marée, Raphaël; BONVOISIN, Catherine; Defraigne, Jean-Olivier; Krzesinski, Jean-Marie; Jouret, François

in American Journal of Translational Research (2015), 7(1), 128-138

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See detailZebrafish bone and general physiology are differently affected by hormones or changes in gravity.
Aceto, Jessica; Nourizadeh-Lillabadi, Rasoul; Marée, Raphaël; Dardenne, Nadia; Jeanray, Nathalie; Wehenkel, Louis; Aleström, Peter; van Loon, Jack; Muller, Marc

in PLoS ONE (2015), 10(6), 1-42

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See detailThe timing of surgery after neoadjuvant radiotherapy influences tumor dissemination in a preclinical model
Leroi, Natacha; Sounni, Nor Eddine; Van Overmeire, Eva; Blacher, Silvia; Marée, Raphaël; Van Ginderachter, Jo; Lallemand, François; LENAERTS, Eric; COUCKE, Philippe; Noël, Agnès; MARTINIVE, Philippe

in Oncotarget (2015)

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See detailPhenotype Classification of Zebrafish Embryos by Supervised Learning
Jeanray, Nathalie; Marée, Raphaël; Pruvot, Benoist; Stern, Olivier; Geurts, Pierre; Wehenkel, Louis; Muller, Marc

in PLoS ONE (2015), 10(1), 01169891-20

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See detailGenetic study of triple negative breast cancers
Boukerroucha, M; Josse, Claire; El Guendi, Sonia; FRERES, Pierre; Marée, Raphaël; Wenric, Stéphane; SEGERS, Karin; COLLIGNON, Joëlle; JERUSALEM, Guy; BOURS, Vincent

Poster (2015)

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See detailEvaluation of BRCA1-related molecular features and microRNAs as prognostic factors for triple negative breast cancers.
Boukerroucha, Meriem; Josse, Claire; El Guendi, Sonia; Boujemla, Bouchra; Freres, Pierre; Marée, Raphaël; Wenric, Stéphane; SEGERS, Karin; COLLIGNON, Joëlle; Jerusalem, Guy; Bours, Vincent

in BMC cancer (2015), 15(1), 755

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See detailEvaluation and Comparison of Anatomical Landmark Detection Methods for Cephalometric X-Ray Images: A Grand Challenge
Ching Wei, Wang; Cheng-Ta, Huang; Meng-Che, Hsieh; Chu-Hsing, Li; Vandaele, Rémy; Sheng-Wei, Chang; Wei-Cheng, Li; Marée, Raphaël; Guoyan, Zheng; Ghassan, Hamarneh; Vrtovec, Tomaz; JODOGNE, Sébastien; Geurts, Pierre; Chengwen, Chu; Hengameh, Mirzaalian; Bulat, Ibragimov

in IEEE Transactions on Medical Imaging (2015)

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See detailTowards generic image classification: an extensive empirical study
Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

E-print/Working paper (2014)

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See detailHistoWeb - Toward a new learning ecology for histology
Vincke, Grégoire; Marée, Raphaël; Wehenkel, Louis; Defaweux, Valérie; QUATRESOOZ, Pascale; d'Haene, N; Salmon, Isabelle; Renard, P; Depiereux, Eric; Snoeck, C; Denis, Brigitte; Verpoorten, Dominique

Conference (2014, December 16)

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See detailHistoWeb - Transforming a professional bioimages platform into a learning tool for histology
QUATRESOOZ, Pascale; Defaweux, Valérie; Rollus, Loïc; Stevens, Benjamin; Marée, Raphaël; Martin, Vincent; Van de Poël, Jean-François; Schaffer, Patrick; Vincke, Grégoire; Wehenkel, Louis; Verpoorten, Dominique

Scientific conference (2014, October 30)

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See detailDoes neoadjuvant radiotherapy and the timing of surgery modify metastatic dissemination?
Leroi, Natacha; Blacher, Silvia; Marée, Raphaël; Noël, Agnès; COUCKE, Philippe; MARTINIVE, Philippe

Conference (2014, June 29)

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See detailA hybrid human-computer approach for large-scale image-based measurements using web services and machine learning
Marée, Raphaël; Rollus, Loïc; Stevens, Benjamin; Louppe, Gilles; Caubo, Olivier; Rocks, Natacha; Bekaert, Sandrine; Cataldo, Didier; Wehenkel, Louis

in Proceedings IEEE International Symposium on Biomedical Imaging (2014, May)

See detailInfluence of tumor inflammatory microenvironment after neoadjuvant radiotherapy on lung metastases occurrence in a mouse model.
Leroi, Natacha; Blacher, Silvia; Marée, Raphaël; Noël, Agnès; COUCKE, Philippe; MARTINIVE, Philippe

Conference (2014)

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See detailEvaluation of CellSolutions BestPrep(R) Automated Thin-Layer Liquid-Based Cytology Papanicolaou Slide Preparation and BestCyte(R) Cell Sorter Imaging System.
Delga, Agnes; GOFFIN, Frédéric; Kridelka, Frédéric; Marée, Raphaël; LAMBERT, Chantal; Delvenne, Philippe

in Acta cytologica (2014)

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See detailAutomatic Landmark Detection in 2D images: A tree-based approach with multiresolution pixel features
Vandaele, Rémy; Marée, Raphaël; JODOGNE, Sébastien; Geurts, Pierre

Report (2014)

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See detailAutomatic Cephalometric X-Ray Landmark Detection Challenge 2014: A tree-based algorithm
Vandaele, Rémy; Marée, Raphaël; JODOGNE, Sébastien; Geurts, Pierre

Report (2014)

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See detailACTIVATION OF THE CALCIUM-SENSING RECEPTOR BEFORE RENAL ISCHEMIA/REPERFUSION EXACERBATES KIDNEY INJURY IN MOUSE
Jouret, François; De Tullio, Pascal; Poma, Laurence; Marée, Raphaël; BOVY, Christophe; DEFRAIGNE, Jean

in Transplant International (2014), 27 suppl 1

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See detailA rich internet application for remote visualization and collaborative annotation of digital slide images in histology and cytology
Marée, Raphaël; Stevens, Benjamin; Rollus, Loïc; Rocks, Natacha; Moles Lopez, Xavier; Salmon, Isabelle; Cataldo, Didier; Wehenkel, Louis

in Diagnostic Pathology (2013), 8(S1), 26

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See detailAutomated Processing of Zebrafish Imaging Data: A Survey
Mikut, Ralf; Dickmeis, Thomas; Driever, Wolfgang; Geurts, Pierre; Hamprecht, Fred A.; Kausler, Bernhard X.; Ledesma-Carbayo, Maria J.; Maree, Raphael; Mikula, Karol; Pantazis, Periklis; Ronneberger, Olaf; Santos, Andres; Stotzka, Rainer; Strahle, Uwe; Peyrieras, Nadine

in Zebrafish (2013), 10(3), 401-421

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See detailExtremely Randomized Trees and Random Subwindows for Image Classification, Annotation, and Retrieval
Marée, Raphaël; Wehenkel, Louis; Geurts, Pierre

in Criminisi, A; Shotton, J (Eds.) Decision Forests in Computer Vision and Medical Image Analysis, Advances in Computer Vision and Pattern Recognition (2013)

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See detailStructural Determinants of Specificity and Catalytic Mechanism in mammalian 25-kDa Thiamine Triphosphatase
Delvaux, David; Kerff, Frédéric; Murty, Mamidanna R.V.S.; Lakaye, Bernard; Czerniecki, Jan; Kohn, Grégory; Wins, Pierre; Herman, Raphaël; Gabelica, Valérie; Heuze, Fabien; Tordoir, Xavier; Marée, Raphaël; Matagne, André; Charlier, Paulette; De Pauw, Edwin; Bettendorff, Lucien

in Biochimica et Biophysica Acta - General Subjects (2013), 1830

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See detailIdentification of protein biomarkers associated with cardiac ischemia by a proteomic approach.
Fillet, Marianne; Deroyer, Céline; COBRAIVILLE, G.; LE GOFF, Caroline; Cavalier, Etienne; Chapelle, Jean-Paul; Marée, Raphaël; Legrand, Victor; Pierard, Luc; Kolh, Philippe; Merville, Marie-Paule

in Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals (2013), 18(7), 614-24

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See detailA rich internet application for remote visualization, collaborative annotation, and automated analysis of large-scale biomages
Marée, Raphaël; Stevens, Benjamin; Rollus, Loïc; Louppe, Gilles; Wehenkel, Louis

Poster (2012, October)

See detailA rich internet application for remote visualization, collaborative annotation, and automated analysis of large-scale biomages
Marée, Raphaël

Conference (2012, September 18)

See detailA web-based software for visualization, collaborative annotation, and automated analysis of bioimages: Zebrafish applications
Marée, Raphaël

Conference (2012, March 23)

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See detailPhenotype Classification of Zebrafish Embryos by Supervised Learning
Jeanray, Nathalie; Marée, Raphaël; Pruvot, Benoist; Stern, Olivier; Geurts, Pierre; Wehenkel, Louis; Muller, Marc

Poster (2011, December 08)

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See detailA web-based framework for visualization, annotation, and automatic exploitation of high-resolution bioimages using tree-based machine learning methods
Stevens, Benjamin; Rollus, Loïc; Wehenkel, Louis; Marée, Raphaël

Poster (2011, November 02)

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See detailPhenotype Classification of Zebrafish Embryos by Supervised Learning
Jeanray, Nathalie; Marée, Raphaël; Pruvot, Benoist; Stern, Olivier; Geurts, Pierre; Wehenkel, Louis; Muller, Marc

Conference (2011, September 02)

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See detailHigh-density lipoprotein proteome dynamics in human endotoxemia.
Levels, Johannes Hm; Geurts, Pierre; Karlsson, Helen; Marée, Raphaël; Ljunggren, Stefan; Fornander, Louise; Wehenkel, Louis; Lindahl, Mats; Stroes, Erik Sg; Kuivenhoven, Jan A; Meijers, Joost Cm

in Proteome science (2011), 9(1), 34

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See detailZebrafish Skeleton Measurements using Image Analysis and Machine Learning Methods
Stern, Olivier; Marée, Raphaël; Aceto, Jessica; Jeanray, Nathalie; Muller, Marc; Wehenkel, Louis; Geurts, Pierre

Poster (2011, May 20)

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See detailPhenotype Classification of Zebrafish Embryos by Supervised Learning
Jeanray, Nathalie; Marée, Raphaël; Pruvot, Benoist; Stern, Olivier; Geurts, Pierre; Wehenkel, Louis; Muller, Marc

Poster (2011, May 20)

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See detailDiscovery and biochemical characterisation of four novel biomarkers for osteoarthritis.
DE SENY, Dominique; Sharif, Mohammed; Fillet, Marianne; COBRAIVILLE, Gaël; Meuwis, Marie-Alice; Marée, Raphaël; HAUZEUR, Jean-Philippe; Wehenkel, Louis; Louis, Edouard; Merville, Marie-Paule; Kirwan, John; Ribbens, Clio; Malaise, Michel

in Annals of the Rheumatic Diseases (2011), 70(6), 1144-52

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See detailAutomatic localization of interest points in zebrafish images with tree-based methods
Stern, Olivier; Marée, Raphaël; Aceto, Jessica; Jeanray, Nathalie; Muller, Marc; Wehenkel, Louis; Geurts, Pierre

in Proceedings of the 6th IAPR International Conference on Pattern Recognition in Bioinformatics (2011)

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See detailRadar Classification based on Extra-Trees
Pisane, Jonathan; Marée, Raphaël; Wehenkel, Louis; Verly, Jacques

(2010, May 24)

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See detailZebrafish as model in toxicology/pharmacology.
Voncken, Audrey; Piot, Amandine; Stern, Olivier; Marée, Raphaël; Peers, Bernard; Wehenkel, Louis; Martial, Joseph; Muller, Marc

Poster (2010, March 17)

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See detailIncremental Indexing and Distributed Image Search using Shared Randomized Vocabularies
Marée, Raphaël; Denis, Philippe; Wehenkel, Louis; Geurts, Pierre

in ACM Proceedings MIR 2010 (2010, March)

Peer Reviewed
See detailRobust Automatic Target Recognition Using Extra-trees
Pisane, Jonathan; Marée, Raphaël; Wehenkel, Louis; Verly, Jacques

in Pisane, Jonathan (Ed.) Robust Automatic Target Recognition Using Extra-trees (2010)

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See detailOligodendrocyte development and myelinogenesis are not impaired by high concentrations of phenylalanine or its metabolites.
Schoemans, Renaud; Aigrot, Marie-Stephane; Wu, Chaohong; Marée, Raphaël; Hong, Pengyu; Belachew, Shibeshih; Josse, Claire; Lubetzki, Catherine; Bours, Vincent

in Journal of Inherited Metabolic Disease (2010), 33(2), 113-20

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See detailBiomedical Imaging Modality Classification Using Bags of Visual and Textual Terms with Extremely Randomized Trees: Report of ImageCLEF 2010 Experiments
Marée, Raphaël; Stern, Olivier; Geurts, Pierre

in CLEF Notebook Papers/LABs/Workshops (2010)

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See detailFast Multi-Class Image Annotation with Random Subwindows and Multiple Output Randomized Trees
Dumont, Marie; Marée, Raphaël; Wehenkel, Louis; Geurts, Pierre

in Proc. International Conference on Computer Vision Theory and Applications (VISAPP) (2009, February)

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See detailContent-based Image Retrieval by Indexing Random Subwindows with Randomized Trees
Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

in IPSJ Transactions on Computer Vision and Applications (2009), 1

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See detailProtéomique par SELDI-TOF-MS des maladies inflammatoires articulaires: identification des protéines S100 comme protéines d'intérêt
De Seny, Dominique; Ribbens, Clio; Cobraiville, Gaël; Meuwis, Marie-Alice; Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis; Louis, Edouard; Merville, Marie-Paule; Fillet, Marianne; Malaise, Michel

in Revue Médicale de Liège (2009), 64(Spec No), 29-35

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See detailP2X1 Ion Channels Promote Neutrophil Chemotaxis through Rho Kinase Activation
Lecut, Christelle; Frederix, Kim; Johnson, Daniel M; Deroanne, Christophe; Thiry, Marc; Faccinetto, Céline; Marée, Raphaël; Evans, Richard J; Volders, Paul GA; Bours, Vincent; Oury, Cécile

in Journal of Immunology (2009)

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See detailA Machine Learning Approach for Material Detection in Hyperspectral Images
Marée, Raphaël; Stevens, Benjamin; Geurts, Pierre; Guern, Yves; Mack, Philippe

in Proc. 6th IEEE Workshop on Object Tracking and Classification Beyond and in the Visible Spectrum (OTCBVS-CVPR09) (2009)

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See detailAn Extra-trees-based Automatic Target Recognition Algorithm
Pisane, Jonathan; Marée, Raphaël; Ries, Philippe; Wehenkel, Louis; Verly, Jacques

in To appear in Proc. International Radar Conference (2009)

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See detailBiomarker discovery in asthma-related inflammation and remodeling.
Quesada Calvo, Florence; Fillet, Marianne; De Seny, Dominique; Meuwis, Marie-Alice; Marée, Raphaël; Crahay, Céline; Paulissen, Geneviève; Rocks, Natacha; Guéders, Maud; Wehenkel, Louis; Merville, Marie-Paule; Louis, Renaud; Foidart, Jean-Michel; Noël, Agnès; Cataldo, Didier

in Proteomics (2009), 9(8), 2163-2170

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See detailProteomics for prediction and characterization of response to infliximab in Crohn's disease: a pilot study.
Meuwis, Marie-Alice; Fillet, Marianne; Lutteri, Laurence; Marée, Raphaël; Geurts, Pierre; De Seny, Dominique; Malaise, Michel; Chapelle, Jean-Paul; Wehenkel, Louis; Belaiche, Jacques; Merville, Marie-Paule; Louis, Edouard

in Clinical Biochemistry (2008), 41(12), 960-7

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See detailA novel formulation of inhaled doxycycline reduces allergen-induced inflammation, hyperresponsiveness and remodeling by matrix metalloproteinases and cytokines modulation in a mouse model of asthma
Guéders, Maud; Bertholet, P.; Perin, Fabienne; Rocks, Natacha; Marée, Raphaël; Botta, Vincent; Louis, Renaud; Foidart, Jean-Michel; Noël, Agnès; Evrard, Brigitte; Cataldo, Didier

in Biochemical Pharmacology (2008), 75(2), 514-26

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See detailMonomeric calgranulins measured by SELDI-TOF mass spectrometry and calprotectin measured by ELISA as biomarkers in arthritis
De Seny, Dominique; Fillet, Marianne; Ribbens, Clio; Marée, Raphaël; Meuwis, Marie-Alice; Lutteri, Laurence; Chapelle, Jean-Paul; Wehenkel, Louis; Louis, Edouard; Merville, Marie-Paule; Malaise, Michel

in Clinical Chemistry (2008), 54

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See detailCompositional protein analysis of HDL by SELDI-TOF MS during experimental endotoxemia
Levels, Johannes HM; Marée, Raphaël; Geurts, Pierre; Kuivenhoven, Jan Albert; Wehenkel, Louis; Kastelein, John JP; Meijers, Joost C M

Poster (2008)

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See detailPREDetector : Prokaryotic Regulatory Element Detector
Hiard, Samuel; Rigali, Sébastien; Colson, Séverine; Marée, Raphaël; Wehenkel, Louis

Poster (2007, November 12)

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See detailRandom Subwindows and Randomized Trees for Image Retrieval, Classification, and Annotation
Marée, Raphaël; Dumont, Marie; Geurts, Pierre; Wehenkel, Louis

Poster (2007, July 22)

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See detailPREDetector: A new tool to identify regulatory elements in bacterial genomes
Hiard, Samuel; Marée, Raphaël; Colson, Séverine; Hoskisson, Paul A.; Titgemeyer, Fritz; van Wezel, Gilles P.; Joris, Bernard; Wehenkel, Louis; Rigali, Sébastien

in Biochemical and Biophysical Research Communications (2007), 357(4), 861-864

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See detailPREDetector : Prokaryotic Regulatory Element Detector
Hiard, Samuel; Rigali, Sébastien; Colson, Séverine; Marée, Raphaël; Wehenkel, Louis

Poster (2007, February 15)

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See detailRandom Subwindows and Multiple Output Decision Trees for Generic Image Annotation
Dumont, Marie; Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

Poster (2007)

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See detailRandom subwindows and extremely randomized trees for image classification in cell biology
Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

in BMC Cell Biology (2007), 8(Suppl. 1),

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See detailNouvelles approches dans la prise en charge de l'infection a VIH.
Chandrika, K.; Dellot, Patricia; Frippiat, Frédéric; Giot, Jean-Baptiste; Leonard, Philippe; Marée, Raphaël; Mayasi, N.; Meuris, Christelle; Mukeba Tshialala, D.; Rahmouni, Souad; Uurlings, Françoise; Vaira, Dolorès; Wehenkel, Louis; Demonty, Jean; Moutschen, Michel

in Revue Médicale de Liège (2007), 62 Spec No

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See detailContent-based Image Retrieval by Indexing Random Subwindows with Randomized Trees
Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

in Proc. 8th Asian Conference on Computer Vision (ACCV), LNCS (2007)

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See detailPreDetector : Prokaryotic Regulatory Element Detector
Hiard, Samuel; Rigali, Sébastien; Colson, Séverine; Marée, Raphaël; Wehenkel, Louis

Poster (2006, May 17)

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See detailSegment and combine: a generic approach for supervised learning of invariant classifiers from topologically structured data
Geurts, Pierre; Marée, Raphaël; Wehenkel, Louis

in Proceedings of the Machine Learning Conference of Belgium and The Netherlands (Benelearn) (2006)

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See detailReinforcement learning with raw image pixels as input state
Ernst, Damien; Marée, Raphaël; Wehenkel, Louis

in Advances in machine vision, image processing & pattern analysis (Lecture notes in computer science, Vol. 4153) (2006)

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See detailBiological Image Classification with Random Subwindows and Extra-Trees
Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

Conference (2006)

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See detailRandom Subwindows for Robust Image Classification
Marée, Raphaël; Geurts, Pierre; Piater, Justus; Wehenkel, Louis; Schmid, Cordelia; Soatto, Stefano; Tomasi, Carlo

in Proceedings of the IEEE International Conference on Computer Vision and Pattern Recognition (CVPR 2005) (2005)

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See detailDecision Trees and Random Subwindows for Object Recognition
Marée, Raphaël; Geurts, Pierre; Piater, Justus; Wehenkel, Louis

in ICML workshop on Machine Learning Techniques for Processing Multimedia Content (MLMM2005) (2005)

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See detailClassification automatique d'images par arbres de d́ecision
Marée, Raphaël

Doctoral thesis (2005)

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See detailBiomedical image classification with random subwindows and decision trees
Marée, Raphaël; Geurts, Pierre; Piater, Justus; Wehenkel, Louis

in Computer Vision for Biomedical Image Applications (2005)

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See detailA generic approach for image classification based on decision tree ensembles and local sub-windows
Marée, Raphaël; Geurts, Pierre; Piater, Justus; Wehenkel, Louis; Hong, K.-S.; Zhang, Z.

in Proceedings of the 6th Asian Conference on Computer Vision (2004)

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See detailUne méthode générique pour la classification automatique d'images à partir des pixels
Marée, Raphaël; Geurts, Pierre; Wehenkel, Louis

in Revue des Nouvelles Technologies de l'Information (2003), 1

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See detailAn empirical comparison of machine learning algorithms for generic image classification
Marée, Raphaël; Geurts, Pierre; Visimberga, Giorgio; Piater, Justus; Wehenkel, Louis; Coenen, F.; Preece, A.; Macintosh, A. L.

in Proceedings of the 23rd SGAI international conference on innovative techniques and applications of artificial intelligence, Research and development in intelligent systems XX, (2003)