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See detailMicrosatellite Amplification in Plants: Optimization Procedure of Major PCR Components
Ghaffari, Sana; Hasnaoui, Nejib ULg

in Kantartzi, Stella (Ed.) Methods in Molecular Biology™ series: Microsatllites (2013)

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See detailA micro–macro approach of permeability evolution in rocks excavation damaged zones
Levasseur, Séverine ULg; Collin, Frédéric ULg; Charlier, Robert ULg et al

in Computers & Geotechnics (2013), 49

Excavation damaged zone, with significant irreversible deformations and nonnegligible changes in flow and transport properties generally occurs in indurated clay around underground structures. The stress ... [more ▼]

Excavation damaged zone, with significant irreversible deformations and nonnegligible changes in flow and transport properties generally occurs in indurated clay around underground structures. The stress perturbation around the excavation could lead to a significant increase of the permeability physically due to diffuse and/or localized microcracks growth in the material. In the present study, we investigate microcracks-induced damage processes together with the subsequent modification in permeability. The proposed approach is based on a homogenization-based upper bound extended to the context of micro-cracked media in presence of initial stress. Application of this approach is done on a borehole excavation problem related to the Selfrac in situ experiments on Opalinus Clay. Although, the model fails to quan-titatively account for the in situ permeability change (which may also originated from existing macro-fractures), its prediction shows a significant evolution of the material permeability around the borehole. This is in qualitative agreement with available data. [less ▲]

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See detailThe country of residence and migrant transnationalism: how do opportunity structures in countries of residence affect transnational attitudes and behavior of migrant organizations from the African Great Lakes region
Van Houte, Marieke; Perrin, Nathalie ULg; Orrnert, Anna

in Halm, Dirk; Sezgin, Zeynep (Eds.) Migration and Organized Civil Society: Rethinking national policy (2013)

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See detailMapping Magnetic Near-Field Distributions of Plasmonic Nanoantennas
Denkova, D; Verellen, N; Silhanek, Alejandro ULg et al

in ACS Nano (2013)

We present direct experimental mapping of the lateral magnetic near-field distribution in plasmonic nanoantennas using aperture scanning nearfield optical microscopy (SNOM). By means of full-field ... [more ▼]

We present direct experimental mapping of the lateral magnetic near-field distribution in plasmonic nanoantennas using aperture scanning nearfield optical microscopy (SNOM). By means of full-field simulations it is demonstrated how the coupling of the hollow-pyramid aperture probe to the nanoantenna induces an effective magnetic dipole which efficiently excites surface plasmon resonances only at lateral magnetic field maxima. This excitation in turn affects the detected light intensity enabling the visualization of the lateral magnetic near-field distribution of multiple odd and even order plasmon modes with subwavelength spatial resolution. [less ▲]

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See detailThe relevance of food composition data for nutrition surveys in rural Tibet: pilot study in the context of Kashin-Beck Disease
DERMIENCE, Michael ULg; Mathieu, Françoise; Barthelemy, Jean-Paul ULg et al

in Biotechnologie, Agronomie, Société et Environnement = Biotechnology, Agronomy, Society and Environment [=BASE] (2013), 17(1), 32-42

Kashin-Beck disease (KBD) is an endemic and chronic osteochondropathy. This disease principally occurs in the Tibet Autonomous Region and in several provinces of the People’s Republic of China. The ... [more ▼]

Kashin-Beck disease (KBD) is an endemic and chronic osteochondropathy. This disease principally occurs in the Tibet Autonomous Region and in several provinces of the People’s Republic of China. The etiology of the disease remains obscure although environmental factors are assumed to be involved. Diet, in particular, differentiates the rural community, affected by KBD, from the other communities (nomads and city-dwellers), who remain unaffected. In anticipation of a nutrition survey, this study aimed to measure the mineral content (Ca, P, Mg, Fe, Zn, Mn, Cu, Ni, Se, Al, Sr, Mo, Cd, As, Pb, Hg, Cr, and Co) of eight Tibetan staple foods and to compare the results against two food composition tables (FCTs). Foods were sampled in twenty households selected from both an endemic and a non-endemic area of rural Tibet. Ten minerals involved in bone metabolism were measured using atomic and molecular spectrometric methods. Results revealed that a very limited number of food/constituent pairs showed a variation in mineral composition during a single year of testing for a given region. In addition, results showed significant differences in mineral content between the endemic and the non-endemic area, especially for wheat flour. Following our analysis of the mineral content of the Tibetan food samples, results were statistically compared with similar foods listed in two food composition tables: the USDA National Nutrient Database (USDA Food Search for Windows, Version 1.0, database version SR23), and the China Food Composition Table (book 1, 2nd edition). More than 50 to 60% of p-values < 0.05 were highlighted, suggesting the inappropriateness of using FCTs as a reference for nutrition surveys in rural Tibet, and emphasizing the need for analysis of traditional foods. Differences were found to be more or less marked depending on the element considered, and calcium content seemed to show the greatest difference. Although it is obviously too early for definite conclusions to be reached (insufficient number of samples by food and insufficient number of foods analyzed), it seems that the present pilot-study indicates significant discrepancies between measured and tabulated values of the mineral content of certain foods. A more complete survey would therefore seem mandatory. [less ▲]

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See detailIdentification and structure elucidation of four cannabimimetic compounds in seized products
Denooz, Raphaël ULg; VAN HEUGEN, Jean-Claude ULg; Frederich, Michel ULg et al

in Journal of Analytical Toxicology (2013)

Since 2008, herbal mixtures with synthetic cannabinoid compounds have been sold as incense throughout the world. Although these new drugs are labeled as not for human consumption, these products are ... [more ▼]

Since 2008, herbal mixtures with synthetic cannabinoid compounds have been sold as incense throughout the world. Although these new drugs are labeled as not for human consumption, these products are smoked for their cannabis-like effects. This study reports the structural and spectral elucidation of four cannabimimetic compounds seized in Belgium: (4-methoxyphenyl)-1-(pentyl-1H-indol-3-yl)methanone (RCS-4), 1-(5-fluoropentyl)-3-(1-naphtoyl)indole (AM-2201), 2-(2-chlorophenyl)-1-(1-pentylindol-3-yl)ethanone (JWH-203) and 4-ethylnaphthalen-1-yl-(1-pentylindol-3-yl)methanone (JWH-210). Laboratory investigations were conducted by liquid chromatography (LC)–ultraviolet spectroscopy, high-resolution accurate mass detection and nuclear magnetic resonance (NMR) analysis. This combined analytical approach allowed the detection of illicit compounds for which reference materials were not available. To facilitate identification and to complete existing databases, ultraviolet spectra and NMR data of all seized products are presented. Additionally, LC–quadrupole time-of-flight data were recorded to provide absolute identification. [less ▲]

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See detailGFR Estimation Using Standardized Cystatin C in Kidney Transplant Recipients
Masson, Ingrid; Maillard, Nicolas; Tack, Ivan et al

in American Journal of Kidney Diseases (2013), 61(2), 279-284

Background: The utility of serum cystatin C (SCysC) as a filtration marker in kidney transplantation is uncertain. We took advantage of the recent validation of a reference calibrator for SCysC and of ... [more ▼]

Background: The utility of serum cystatin C (SCysC) as a filtration marker in kidney transplantation is uncertain. We took advantage of the recent validation of a reference calibrator for SCysC and of newly developed CKD-EPI (Chronic Kidney Disease Epidemiology Collaboration) equations (2012) expressed for use with standardized SCysC level to reassess the performance of SCysC as a filtration marker in kidney transplant recipients. Study Design: Study of diagnostic test accuracy. Setting & Participants: 670 kidney transplant recipients from 3 centers undergoing glomerular filtration rate (GFR) measurements from December 2006 to November 2012. Index Test: Estimated GFR (eGFR) using the 2012 SCysC-based and serum creatinine (SCr)/SCysCbased CKD-EPI equations (eGFRcys and eGFRcr-cys, respectively) and the 2009 SCr-based CKD-EPI equation (eGFRcr), with SCysC and SCr measured at a single laboratory between April 2011 and June 2011. Reference Test: Measured GFR (mGFR) using urinary clearance of inulin. Results: Bias (the difference between mGFR and eGFR) was significantly smaller for eGFRcys and eGFRcr-cys versus eGFRcr ( 2.82 and 0.54 vs 4.4 mL/min/1.73 m2, respectively; P 0.001). Precision (standard deviation of the mean bias) also was better for eGFRcys and eGFRcr-cys versus eGFRcr (12 and 11 vs 13 mL/min/1.73 m2 [P 0.001 for both comparisons]). Accuracy (percentage of GFR estimates within 30% of mGFR) was greater for eGFRcys and eGFRcr-cys versus eGFRcr (81% and 86% vs 75%, respectively [P 0.004 and P 0.001]). Net reclassification index with respect to mGFR of 30 mL/min/1.73 m2 for eGFRcr-cys and eGFRcys versus eGFRcr was 18.8% [95% CI, 8.6%-28.9%] and 22.5% [95% CI, 10.2%-34.9%]. Limitations: Patients were exclusively of European descent; association with transplant outcome was not evaluated. Conclusions: Our data validate the use of both the newly developed SCysC-based and SCr/SCysC-based CKD-EPI equations (2012) in kidney transplant recipients. Both equations perform better than the SCr-based CKD-EPI equation (2009). [less ▲]

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See detailEtude clinique d’une dyade, régressant en fonctionnement borderline au niveau contextuel, individuel et familial, caractérisée par un passage à l’acte abusif d’ordre sexuel
Aubinet, Suzanne ULg; D'Amore, Salvatore ULg; Cancrini, Luigi

in Thérapie Familiale (2013), 2

This research is based on Luigi Cancrini’s theory of regression in borderline functioning which provides a structured and nuanced reflection on sexual abuse. It offers the possibility of establishing a ... [more ▼]

This research is based on Luigi Cancrini’s theory of regression in borderline functioning which provides a structured and nuanced reflection on sexual abuse. It offers the possibility of establishing a framework for observation and analysis of both synchronic and diachronic blendings; the behavioral characteristics proposed by the victims, perpetrators and their families; and the historical sense that can give them. It leads to the identification of the central link connecting the actors and their life contexts. We analyze a clinical situation with sexual abuse. The chosen dyad, composed by a 7 year-old-girl and a 13 ½ year-old-boy, was observed in vivo during hospitalization. Relevant behavioral, relational and historical components were compiled in an analytic scale based on Cancrini (2009) and Barudy (1997) writings. Similar psychopathological functioning among perpetrators, victims and families could thus be seen within this framework. The comparison of the systems reported similar family dynamics within the different subsystems. For these children, this results in the emergence of a specific behavioral repertory, typical of a borderline functioning, characterizing both the perpetrator and the aggressed: both are embedded in rigid supporting dyadic relational patterns and intense cleaved positions, which are also found within the various systems and the individuals within them. [less ▲]

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See detailStimulation of the sphenopalatine ganglion (SPG) for cluster headache treatment. Pathway CH-1: A randomized, sham-controlled study.
Schoenen, Jean ULg; Jensen, Rigmor Hojland; Lanteri-Minet, Michel et al

in Cephalalgia : An International Journal of Headache (2013)

BackgroundThe pain and autonomic symptoms of cluster headache (CH) result from activation of the trigeminal parasympathetic reflex, mediated through the sphenopalatine ganglion (SPG). We investigated the ... [more ▼]

BackgroundThe pain and autonomic symptoms of cluster headache (CH) result from activation of the trigeminal parasympathetic reflex, mediated through the sphenopalatine ganglion (SPG). We investigated the safety and efficacy of on-demand SPG stimulation for chronic CH (CCH).MethodsA multicenter, multiple CH attack study of an implantable on-demand SPG neurostimulator was conducted in patients suffering from refractory CCH. Each CH attack was randomly treated with full, sub-perception, or sham stimulation. Pain relief at 15 minutes following SPG stimulation and device- or procedure-related serious adverse events (SAEs) were evaluated.FindingsThirty-two patients were enrolled and 28 completed the randomized experimental period. Pain relief was achieved in 67.1% of full stimulation-treated attacks compared to 7.4% of sham-treated and 7.3% of sub-perception-treated attacks (p < 0.0001). Nineteen of 28 (68%) patients experienced a clinically significant improvement: seven (25%) achieved pain relief in >/=50% of treated attacks, 10 (36%), a >/=50% reduction in attack frequency, and two (7%), both. Five SAEs occurred and most patients (81%) experienced transient, mild/moderate loss of sensation within distinct maxillary nerve regions; 65% of events resolved within three months.InterpretationOn-demand SPG stimulation using the ATI Neurostimulation System is an effective novel therapy for CCH sufferers, with dual beneficial effects, acute pain relief and observed attack prevention, and has an acceptable safety profile compared to similar surgical procedures. [less ▲]

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See detailSuccessful Asteroseismology for a Better Characterization of the Exoplanet HAT-P-7b
Oshagh, M.; Grigahcène, A.; Benomar, O. et al

in Astrophysics and Space Science Proceedings (2013), 31

It is well known that asteroseismology is the unique technique permitting the study of the internal structure of pulsating stars using their pulsational frequencies, which is per se very important. It ... [more ▼]

It is well known that asteroseismology is the unique technique permitting the study of the internal structure of pulsating stars using their pulsational frequencies, which is per se very important. It acquires an additional value when the star turns out to be a planet host. In this case, the asteroseismic study output may be a very important input for the study of the planetary system. With this in mind, we use the large time-span of the Kepler public data obtained for the star system HAT-P-7, first to perform an asteroseismic study of the pulsating star using Time-Dependent-Convection (TDC) models. Secondly, we make a revision of the planet properties in the light of the asteroseismic study. [less ▲]

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See detailTowards Precise Asteroseismology of Solar-Like Stars
Grigahcène, A.; Dupret, Marc-Antoine ULg; Sousa, S. G. et al

in Astrophysics and Space Science Proceedings series (2013), 31

Adiabatic modeling of solar-like oscillations cannot exceed a certain level of precision for fitting individual frequencies. This is known as the problem of near-surface effects on the mode physics. We ... [more ▼]

Adiabatic modeling of solar-like oscillations cannot exceed a certain level of precision for fitting individual frequencies. This is known as the problem of near-surface effects on the mode physics. We present a theoretical study which addresses the problem of frequency precision in non-adiabatic models using a time-dependent convection treatment. We find that the number of acceptable model solutions is significantly reduced and more precise constraints can be imposed on the models. Results obtained for a specific star (β Hydri) lead to very good agreement with both global and local seismic observables. This indicates that the accuracy of model fitting to seismic data is greatly improved when a more complete description of the interaction between convection and pulsation is taken into account. [less ▲]

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See detailThe susceptibility of bananas to crown rot disease is influenced by geographical and seasonal effects
Ewane, Cécile Annie; Lassois, Ludivine; Lepoivre, Philippe ULg et al

in Canadian Journal of Plant Pathology = Revue Canadienne de Phytopathologie (2013)

Crown rot of banana fruits is caused by a complex of fungal pathogens, the most common of which is Colletotrichum musae, and is one of the main quality defects of exported bananas. Susceptibility of ... [more ▼]

Crown rot of banana fruits is caused by a complex of fungal pathogens, the most common of which is Colletotrichum musae, and is one of the main quality defects of exported bananas. Susceptibility of banana fruits to crown rot is influenced by many pre-harvest factors. The aim of this study was to improve on the methodology for the evaluation of fruit susceptibility and to verify whether cultivation areas in Cameroon as well as seasonal variations have an influence on the susceptibility to crown rot. Fruit susceptibility was evaluated on a monthly basis throughout a year (including the dry and rainy seasons) in three banana plantations located at very different agro-ecological conditions (two in a lowland area and one in a highland area). Fruit susceptibility was determined through an internal necrotic surface (INS) assessment after artificial inoculation with C. musae. The standardization of post-inoculation environmental conditions enabled more reliable INS assessments. Fruit susceptibility was found to be significantly influenced by cultivation area (P<0.001) since fruits grown in low altitude (Dia-dia, Koumba, 80 m) were more susceptible than fruits grown in high altitude (Ekona, 500 m). Although no seasonal effect was observed (P=0.075), there was a highly significant date effect (P<0.001). This was specifically the case in low altitude plantations where fruit susceptibility was higher for some harvest dates within the rainy season. In Ekona, fruit grade and number of leaves on the banana plant were found to be significantly higher than in the two other locations, while black leaf streak disease severity was significantly lower. The potential relationship with fruit susceptibility is fully discussed. [less ▲]

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See detailDe quoi Gravettien est-il le nom ?
Noiret, Pierre ULg

in Otte, Marcel (Ed.) Les Gravettiens (2013)

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See detailImpact of follicular G-CSF quantification on subsequent embryo transfer decisions: a proof of concept study.
Ledee, N.; Gridelet, Virginie ULg; RAVET, Stéphanie ULg et al

in Human Reproduction (2013), 28(2), 406-13

BACKGROUND: Previous experiments have shown that granulocyte colony-stimulating factor (G-CSF), quantified in the follicular fluid (FF) of individual oocytes, correlates with the potential for an ongoing ... [more ▼]

BACKGROUND: Previous experiments have shown that granulocyte colony-stimulating factor (G-CSF), quantified in the follicular fluid (FF) of individual oocytes, correlates with the potential for an ongoing pregnancy of the corresponding fertilized oocytes among selected transferred embryos. Here we present a proof of concept study aimed at evaluating the impact of including FF G-CSF quantification in the embryo transfer decisions. METHODS: FF G-CSF was quantified with the Luminex XMap technology in 523 individual FF samples corresponding to 116 fresh transferred embryos, 275 frozen embryos and 131 destroyed embryos from 78 patients undergoing ICSI. RESULTS: Follicular G-CSF was highly predictive of subsequent implantation. The receiving operator characteristics curve methodology showed its higher discriminatory power to predict ongoing pregnancy in multivariate logistic regression analysis for FF G-CSF compared with embryo morphology [0.77 (0.69-0.83), P < 0.001 versus 0.66 (0.58-0.73), P = 0.01)]. Embryos were classified by their FF G-CSF concentration: Class I over 30 pg/ml (a highest positive predictive value for implantation), Class II from 30 to 18.4 pg/ml and Class III <18.4 pg/ml (a highest negative predictive value). Embryos derived from Class I follicles had a significantly higher implantation rate (IR) than those from Class II and III follicles (36 versus 16.6 and 6%, P < 0.001). Embryos derived from Class I follicles with an optimal morphology reached an IR of 54%. Frozen-thawed embryos transfer derived from Class I follicles had an IR of 37% significantly higher than those from Class II and III follicles, respectively, of 8 and 5% (P < 0.001). Thirty-five per cent of the frozen embryos but also 10% of the destroyed embryos were derived from G-CSF Class I follicles. Non-optimal embryos appear to have been transferred in 28% (22/78) of the women, and their pregnancy rate was significantly lower than that of women who received at least one optimal embryo (18 versus 36%, P = 0.04). CONCLUSIONS: Monitoring FF G-CSF for the selection of embryos with a better potential for pregnancy might improve the effectiveness of IVF by reducing the time and cost required for obtaining a pregnancy. [less ▲]

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See detailThe interactions of apamin and tetraethylammonium are differentially affected by single mutations in the pore mouth of small conductance calcium-activated potassium (SK) channels
Dilly, Sébastien ULg; Philippart, Fabian ULg; Lamy, Cédric et al

in Biochemical Pharmacology (2013), 85

Valine residues in the pore region of SK2 (V366) and SK3 (V520) were replaced by either an alanine or a phenylalanine to evaluate the impact on the interactions with the allosteric blocker apamin. Unlike ... [more ▼]

Valine residues in the pore region of SK2 (V366) and SK3 (V520) were replaced by either an alanine or a phenylalanine to evaluate the impact on the interactions with the allosteric blocker apamin. Unlike TEA which showed high sensitivity to phenylalanine mutated channels, the binding affinity of apamin to the phenylalanine mutants was strongly reduced. In addition, currents from phenylalanine mutants were largely resistant to block by apamin. On the other hand, when the valine residue was replaced by an alanine residue, an increase of the binding affinity and the amount of block by apamin was observed for alanine mutated SK2 channels, but not for mutated SK3 channels. Interestingly, the VA mutation reduced the sensitivity to TEA. In silico data confirmed these experimental results. Therefore, such mutations in the pore region of SK channels show that the three-dimensional structure of the SK tetramers can be disorganized in the outer pore region leading to reduced interaction of apamin with its target. [less ▲]

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See detailLes syndromes cardio-rénaux
Krzesinski, Jean-Marie ULg

Learning material (2013)

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See detailAn object-oriented hydrogeological data model for groundwater projects
Wojda, Piotr; Brouyère, Serge ULg

in Environmental Modelling & Software (2013)

Geological and hydrogeological data are expensive to obtain in the field but are crucial for specific hydrogeological studies, from hydrogeological water balances to groundwater flow modelling and ... [more ▼]

Geological and hydrogeological data are expensive to obtain in the field but are crucial for specific hydrogeological studies, from hydrogeological water balances to groundwater flow modelling and contaminant transport, or for more integrated environmental investigations where groundwater plays a role. In this context, hydrogeological data are collected, transformed and exchanged at different scales, from local to international levels and between numerous institutions ranging from environmental consulting companies to the national and international environmental administrations. To guarantee that these exchanges are possible and meaningful, a clear structure and meta-information on applied hydrogeological data models is required. To make one step towards seamless management of groundwater projects, a new hydrogeological data model has been developed: Hg2O. It is described using object-oriented paradigms and it follows the recommendations of the International Organization for Standardization (ISO/TC211), the Open Geospatial Consortium (OGC), and the European Geospatial Information Working Group. Hydrogeological features are organized in packages of spatial feature datasets. The observations and measurements related to these features are organized in a seperate package. A particular focus is on specialized hydrogeological field experiments such as hydraulic and tracer tests. Two first implementations in the proprietary desktop ArcGIS environment and in the open-source web-based Web2GIS platform are presented, focusing on their respective standards support. [less ▲]

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See detailL’Alfier nero (Le Fou noir) d’Arrigo Boito – Lecture anthropologique et poétologique d’un combat d’échecs.
Leyh, Valérie ULg

in Achim Küpper, Kristine Vanden Berghe (Ed.) Guerre et jeu. Perspectives transversales (2013)

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See detailNovel scanning procedure enabling the vectorization of entire rhizotron-grown root systems
Lobet, Guillaume ULg; Draye, X.

in Plant Methods (2013), 9(1),

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See detailMonitoring of slaughterhouse wastewater biodegradation in a SBR using fluorescence and UV–Visible absorbance
Louvet, Jean-Noël ULg; Homeky, Billy; Casellas, Magali et al

in Chemosphere (2013)

The aim of this study was to demonstrate that the effectiveness of slaughterhouse wastewater treatment by activated sludge could be enhanced through the use of optical techniques, such as UV–Visible ... [more ▼]

The aim of this study was to demonstrate that the effectiveness of slaughterhouse wastewater treatment by activated sludge could be enhanced through the use of optical techniques, such as UV–Visible absorbance and fluorescence spectroscopy, to estimate the hydraulic retention time necessary to remove the biodegradable chemical oxygen demand (COD). Two experiments were conducted. First, a batch aerobic degradation was performed on four wastewater samples collected from four different cattle processing sites in order to study the changes in the spectroscopic properties of wastewater during biodegradation. Second, a sequencing batch reactor was used in order to confirm that the wastewater fluorescence could be successfully used to monitor wastewater biodegradation in a pilot-scale experiment. Residual blood was the main source of organic matter in the wastewater samples. The absorbance at 416 nm, related to porphyrins, was correlated to the COD during wastewater biodegradation. The tryptophan-like/fulvic-like fluorescence intensity ratio was related to the extent of biodegradation. The COD removal efficiency ranged from 74% to 94% with an hydraulic retention time (HRT) of 23 h. A ratio of tryptophan-like/fulvic-like fluorescence intensities higher than 1.2 indicated incomplete biodegradation of the wastewater and the need to increase the HRT. [less ▲]

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