Viruses and Cancer

Conference (2013, February 08)

Functional screening of a metagenomic library from algal biofilms

in Smagghe, Guy; Boeckx, Pascal; Bossier, Peter (Eds.) et al Communications in Agricultural and Applied Biological Sciences (2013, February 08)

Macroalgae, and particularly their lignin-free polysaccharides, are increasingly used for their gelling and therapeutic properties and for the production of biofuels and renewable chemical compounds. To ... [more ▼]

Macroalgae, and particularly their lignin-free polysaccharides, are increasingly used for their gelling and therapeutic properties and for the production of biofuels and renewable chemical compounds. To extract, hydrolyze and purify this biomass, algae hydrolyzing enzymes are needed. Our work aims to identify and characterize algal biomass hydrolyzing enzymes expressed by microorganisms living on the surface of algae, by functional metagenomics. Therefore, a microbial DNA extraction method was developed to isolate the gDNA from the microorganisms of the brown algae Ascophyllum nodosum and a metagenomic library was constructed in Escherichia coli. The library was screened for diverse enzymatic activities (esterases, xylanases, cellulases, α-amylases, arabinanases, caseinases and β-glucosidases) on agar plates with specific enzymes substrates. Several new microbial enzymes (esterases, β-glucosidases, α-amylases and cellulases) were identified revealing the wealth of our library. Furthermore, those enzymes had less than 50% sequence identity with known protein sequences; meaning that our approach allows to identify new microbial enzymes expressed by uncultured microorganisms. Plate tests for medium-throughput screening of specific enzymes hydrolyzing algal polysaccharides (agarases, carrageenases and alginate lyases) are currently being developed. Our approach will probably allow us to identify new families of those ill-known enzymes, with particular enzymatic activities. [less ▲]

On-line flow cytometry profiling of Escherichia coli stress response

Conference (2013, February 08)

Impact of the depth on bacterial diversity in an agricultural soil

Poster (2013, February 08)

Bacteria are the most abundant and diverse microorganisms in soils. They play an important role in soil formation, contribute to plant nutrition and are involved in various processes in agroecosystems ... [more ▼]

Bacteria are the most abundant and diverse microorganisms in soils. They play an important role in soil formation, contribute to plant nutrition and are involved in various processes in agroecosystems such as nutrient cycling. The aim of this study was to evaluate the impact of the depth on bacterial diversity and quantity in an agricultural soil. Samples was collected on May 2011 and May 2012 at three different depths : 10, 25 and 45 centimeters. The quantity of total bacteria was measured by real time PCR and the analysis of the diversity was performed by the high throughput sequencing technology. Results obtained by these methods show that the biomass and the bacterial quantity and diversity (Shannon index) decrease with the depth, particularly at 45 centimeters. The biomass is, in average, 6.5 fold less important at 45 cm than at 10 cm and the quantity is 17 fold lower at 45 cm than at 10 cm. Our results also indicate that many taxa, such as Betaprotebacteria, Deltaproterobacteria, Gammaproteobacteria, Acidobacteria and Burkholderiales are influenced by the depth. The results will be presented in more details on the poster. [less ▲]

What are the main metabolites responsible for the biocontrol potential of Bacillus strains ?

Poster (2013, February 08)

An adaptive large neighborhood search for a vehicle routing problem with multiple trips and driver shifts

Conference (2013, February 07)

Intermodal network design for freight transportation in Belgium - location of rail/road and road/inland waterway terminals

Conference (2013, February 07)

In the recent years, growing concerns about environmental, societal and economic issues have emerged in the society. The improvement and the expansion of the multimodal network is one way of solving those ... [more ▼]

In the recent years, growing concerns about environmental, societal and economic issues have emerged in the society. The improvement and the expansion of the multimodal network is one way of solving those kinds of problems. The objective of this work is therefore the integration of inland waterway, rail and road transport into the linear modeling of intermodal terminal location problems, based on transportation costs functions which are nonlinear with the distance traveled. The model should also take into account the capacity constraints linked to the different modes of transport. [less ▲]

Optimization model for empty container repositioning

Scientific conference (2013, February 07)

Empty container management is a transportation issue relating to the imbalance of container demand and supply. This project aims at minimizing the overall cost of empty container management. It takes ... [more ▼]

Empty container management is a transportation issue relating to the imbalance of container demand and supply. This project aims at minimizing the overall cost of empty container management. It takes account of transit time, shipping cost, the carrying capacity of the various modes of transport, the stochastic demand and supply of each terminal and port as well as other parameters such as substitution or holding costs, plus the intermodality with road transportation. [less ▲]

Petrographical differentiation between Palaeozoic oolitic ironstones from France, Belgium and Germany and application to the provenance study of archaeological artefacts – preliminary results

Conference (2013, February 07)

Samples of Palaeozoic oolitic ironstone beds susceptible of having being used as raw materials for Neolithic red ochres, have been petrographically investigated. The preliminary results of this first ... [more ▼]

Samples of Palaeozoic oolitic ironstone beds susceptible of having being used as raw materials for Neolithic red ochres, have been petrographically investigated. The preliminary results of this first comparative analysis are quite encouraging: microfacies differences have been observed between Ordovician oolitic ironstones from Normandy (France), late Upper Devonian oolitic ironstones from Belgium and uppermost Lower Devonian to lowermost Middle-Devonian (Emsian-Eifelian) oolitic ironstones from the Eifel area (Germany). Petrographical differentiation is based upon contrasting grain size, mineralogy (hematite/chlorite ratio) and typology of the ferruginous ooids, besides differences in mineralogy, diagenetic history and lithologic nature of the host sediments. Most conspicuous are differences in ferruginous ooid typology, including “true” concentric ooids, superficial ooids, algal oncoids and pseudo-ooids (ferruginized cortoids and rounded bioclasts). “Flax seed” or Clinton-type iron ores (rich in flattened ooids) and “fossil iron ores” (essentially composed of ferruginized bioclasts) can be identified as well as transitional or mixed types. Homogenous and well-sorted, often flattened and fine-grained ferruginous “true” ooids (flax seed ore) with alternating hematite and chlorite cortices in a sideritic- chloritic or fine siliciclastic matrix, are characteristic for the Ordovician (Llanvirn) oolitic ironstones of Normandy (basal part of the Urville Shales). Locally, weathered levels exist, enclosing limonitic (goethitic) crusts. Medium-sorted, fine-to coarse- grained ferruginous hematitic pseudo-ooids (ferruginized bioclasts) in a bioclastic limestone matrix (fossil ore) characterize the Lower-Middle Devonian boundary oolitic ironstone beds (Heisdorf and Lauch Formations, Eifel Synclines). Finally, well- to medium-sorted heterogenous, fine- to medium-grained, pure or mixed flax seed- and fossil ore-type hematitic oolitic ironstones in siliclastic and/ore carbonate matrices, characterize the Belgian Latest Upper Devonian (Famennian) ironstone deposits (Hodimont Formation, Famenne Shales Group). Several stratigraphic levels do exist within the Lower Famennian and basal part of the Upper Famennian in the Namur, Dinant and Vesdre Synclinoria, but the lowermost Famennian one is the only level that has been mined. Within some of the younger Famennian oolitic ironstone levels, proximal and distal facies can be distinguished on the basis of microfacies differences and mineralogy of the ferruginous pseudo-ooids. Only the proximal hematitic facies of the lowest stratigraphical oolitic ironstone level (level I) is supposed to have been used in prehistoric times for the manufacturing of ochre. Diagenetic sideritization and dolomitization, particle deformation as well as sulphide mineralizations, affect most of the studied oolitic ironstones. However, the intensity of these mineralizations varies strongly (even within the same deposit) and depends on local tectonics. A distinction can be made between the Emsian-Eifelian and Famennian fossil iron ores, based on the nature of the bioclasts and other ferruginzed components). Eifelian oolitic ironstones contain ferruginized crinoids, bryozoans, trilobites, brachiopods, goniatites besides ferruginized siliciclastic intraclasts, whereas the Famennian ones are dominated by ferruginous ooids and algal oncoids, mixed with ferruginized bioclasts including crinoids, bryozoans, brachiopods, ostracods, algae and incertae sedis, and locally intraclasts (ferruginized stromatolitic crusts). Distal facies contain slightly Fe-impregnated bioclasts only such as crinoid ossicles and display a higher chlorite/hematite ratio. Thin sections have been made in archeological objects (red ochre), allowing a first comparative petrographical analysis indicating their probable geological and geographical provenance. References Ph. Joseph, 1982. Le minerai de fer oolithique Ordovicien du Massif Armoricain: sédimentologie et paléogéographie. Thèse présentée à l’Ecole Nationale Supérieure des Mines de Paris. 325 p. R. Dreesen, 1989. Oolitic ironstones as event-stratigraphical marker beds within the Upper Devonian of the Ardenno-Rhenish Massif, in: Young, T.P. & Taylor, W.E.G. (eds), Phanerozoic Ironstones. Geological Society Special Publications, n°46, pp. 65-78 Rath, S., 2003. Die Erforschungsgeschichtede Eifel-Geologie. Ph.D. Dissertation, Rheinisch- Westfälische Technische Hochschule Aachen, 239 p. [less ▲]

Geological record and sedimentology of the Palaeozoic oolitic ironstone deposits in Western Europe. Spatial relationships with the Linienbandkeramik settlements (LBK) in Belgium.

Conference (2013, February 07)

Mined since prehistoric times, oolitic ironstones (OIS) were a very important world source of iron from 1850 to 1945: hereafter they have been progressively replaced by the Precambrian Banded Iron ... [more ▼]

Mined since prehistoric times, oolitic ironstones (OIS) were a very important world source of iron from 1850 to 1945: hereafter they have been progressively replaced by the Precambrian Banded Iron- Formations (BIF). OIS are iron-rich sedimentary rocks bearing ferruginous ooids. They consist of at least 15% iron. In Western Europe, their overall depositional environment is that of a shallow shelf, most often located close to the transition from non-marine to marine environments. Their main age range is concentrated within the Ordovician through Devonian and the Jurassic through Paleogene. Proterozoic occurrences are known but these occur outside Europe. The host rocks of the ironstones are predominantly clastic, whereas the host sediment of the ferruginous ooids can be either clastic or carbonate or both. The OIS occur at the top of coarsening and shoaling upward cycles. They represent condensed deposits and transgressive system tracts. Numerous oolitic ironstone deposits are interpreted as tempestites or as intertidal deposits. It is generally agreed that ferruginous ooids formed in shallow marine water conditions, near the water-sediment interface, with repeated reworking of the sediment. Such an environment implies oxidizing conditions, the sedimentary iron being in the ferric state. The exact source of the iron is still a matter of discussion and speculation, just as the primary or secondary origin of the ferruginous ooids. Besides hematite (or goethite), also siderite, Fe-dolomite and berthierine/chamosite are present in the OIS as iron-bearing minerals. Due to weathering processes the carbonate matrix is often removed, the iron is released and oxidized, whereas the ferrous silicates are converted into ferric oxides or ferric hydroxides. Many old mining activities are based on occurrences of this weathered ore. The latter material has also strong staining properties. 1. Germany OIS are outcropping in the Eifel area. The latter is part of the Ardenno-Rhenish Massif and lies in the eastern extension of the Neufchateau Synclinorium, south of the Ardenne Anticlinorium (enclosing the Cambro-Ordovician Stavelot-Venn inlier). The general structure of the Eifel corresponds to an intensively folded and faulted synclinorium In the center of this synclinorium, outcrops of OIS occur on both flanks of successive synclines that are individually named (from the north to the south): the Sötenicher Mulde, the Blankenheimer Mulde the Rohrer Mulde, the Dollendorfer Mulde, the Ahrdorfer Mulde and the Hillesheimer Mulde. Two important stratigraphic levels with IOS are known and they coincide more or less with the Lower-Middle Devonian boundary (Uppermost Emsian- Lowermost Eifelian). These OIS represent excellent marker beds for geological mapping. 2. The Netherlands There is no outcrop of OIS in this country. 3. Belgium Oolitic iron ores were formed during different periods in Belgium: the Lochkovian (Lower Devonian, Dinant Synclinorium, restricted to the Belgian-French border), the Givetian (Middle Devonian, Dinant Synclinorium), the Frasnian (Upper Devonian, Dinant Synclinorium), the Famennian (Upper Devonian, Namur S., Dinant S. & Vesdre S.) and the Toarcian-Aalenian (Jurassic, Lorraine area, Paris Basin – called “minette ore”). The most important OIS level is the Lower Famennian one. It has been intensively mined until the middle of the 20th century, essentially in the Namur Synclinorium, between the cities of Namur and Huy. In this area, its important thickness (until 1.85m) and the number of layers triggered the development of an important economic activity. Outcrops were restricted to the tributaries of the Meuse River. The Famennian oolitic ironstone facies change from north to south by a gradual decrease in the number of layers, in their thickness, grain size, ooid concentration, clast size and iron content. They represent also excellent lithostratigraphical marker beds. The clay-dolomitic matrix is being progressively replaced by a calcitic cement. The other Devonian OIS levels are not of great economic importance, they were only mined locally, to supply smith’s working places. Due to surface mining, outcrops are now very rare, and often indicated by a light depression in the topography only. 4. Grand-Duchy of Luxembourg OIS are restricted to the Jurassic (Aalenian-Lower Bajocian) in the NW part of the Paris Basin. This essentially goethitic ore (“minette”) was intensively mined in the three adjacent country borders area (FR-BE-LU). No OIS levels in the Lower Devonian are outcropping in the northern part of the Grand Duchy. 5. France Numerous OIS layers are known in France at several stratigraphical levels, but a lot of them cannot be considered as a real ore. Paleozoic OIS belonging to the Armorican Massif were mined in the Normandy area (Urville Fm, Llanvirn, Middle Ordovician) and in the Bretagne area (Arenig, Lower Ordovician). In Normandy, OIS do outcrop inside several synclines (e.g. May and Urville Sy.), as one thick composite layer.  The spatial relationships of the different oolitic ironstone levels with the Linienbandkeramik settlements (LBK) in the studied area, will be presented. [less ▲]