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See detailEfficiency of haplotype-based methods to fine-map QTLs and embryonic lethal variants affecting fertility: Illustration with a deletion segregating in Nordic Red cattle
Kadri, Naveen Kumar ULg; Sahana, Goutam; Guldbrandtsen, Bernt et al

in Livestock Science (2014), 166

Despite its importance, fertility has been declining in many cattle populations. In dairy cattle, this decline is often attributed to the negative correlation between fertility and productions traits ... [more ▼]

Despite its importance, fertility has been declining in many cattle populations. In dairy cattle, this decline is often attributed to the negative correlation between fertility and productions traits. Recent studies showed that embryonic lethal variants might also account for a non-negligible fraction of the fertility decline. Therefore identification of such embryonic lethal variants is essential to improve fertility. We herein illustrate, with an example of a large recessive lethal deletion recently identified in Nordic Red cattle, that haplotype-based method are particularly efficient to identify such embryonic lethal variants. We first show that haplotypes can be used in traditional QTL mapping approaches and that they present very high linkage disequilibrium with underlying variants. Haplotypes can also be used in scan for lack of homozygosity. Indeed,if a haplotype is associated to a recessive lethal variant, significantly fewer living individuals will be homozygote for that haplotype than expected. For both approaches, haplotype- based methods were particularly efficient. The lack of homozygosity approach achieved higher significance than the QTL approach. Only frequent variants can be detected with both approaches unless huge genotyped cohorts are available. An alternative approach would rely on identifying potential harmful variants in next-generation sequencing data followed by the genotyping of a larger population for these variants. [less ▲]

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See detailGember: hoogwaardige anti-emeticum in de officinale praktijk
Angenot, Luc ULg

in Farma Sfeer (2014), 18(195), 30-31

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See detailCan we interpret linear kernel machine learning models using anatomically labelled regions?
Schrouff, Jessica ULg; Monteiro, Joao; Joao Rosa, Maria et al

Poster (2014, June)

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See detailThe Impact of Dual-Tasking on Verbal Short-Term Memory in Children with Specific Language Impairment
Leclercq, Anne-Lise ULg; Maillart, Christelle ULg; Lange, Manon et al

Poster (2014, June)

Limitations in general processing capacities have been proposed to account for poor verbal short-term memory (STM) performances in children with SLI. Previous studies observed that STM performances ... [more ▼]

Limitations in general processing capacities have been proposed to account for poor verbal short-term memory (STM) performances in children with SLI. Previous studies observed that STM performances decreased to a larger extent in children with SLI as compared to their unaffected peers when the processing demands of the task increased (e.g., Ellis Weismer, et al., 2005; Montgomery, 2000a,b). However, in these studies, the increase in attention processing demands went with an increase in linguistic processing demands. Since children with SLI experience language processing problems, it is not clear whether general attention problems or language processing problems are at the root of their larger performance decrease as compared to their unaffected peers. This study aims at directly assessing the hypothesis that limitations in general attentional capacity are at the root of poor STM performances in children with SLI, using an attention demanding visual search task administered concurrently with nonword repetition task. Twenty-three children with SLI, 23 age-matched children, and 23 nonword span-matched children performed immediate serial recall tasks of nonwords. The STM lists were presented either alone or concurrently with the target detection task. Moreover, the target detection task either stopped or continued when children had to recall the nonwords. Results show a main effect of dual task condition on both nonword repetition accuracy and target detection accuracy. Performances in children with SLI were not more affected than in controls by the necessity to perform a concurrent visual attention task during nonword lists presentation. However, nonword recall seemed to be more challenging for children with SLI than for age-matched controls. Indeed, performances in the visual task were lower in children with SLI than in their age-matched controls, but not as compared to nonword span-matched controls. [less ▲]

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See detailEffect of plant defence elicitor on aphid and disease cross infestations
Bosquée, Emilie ULg; Oumarou, Saadatou; Qiu, Dewen et al

Poster (2014, June)

Various bio-aggressors can infest potato plants (Solanum tuberosum L.) throughout its life cycle. In addition to aphids, in particular Myzus persicae Sulzer which transmits Potato virus Y (PVY), plant ... [more ▼]

Various bio-aggressors can infest potato plants (Solanum tuberosum L.) throughout its life cycle. In addition to aphids, in particular Myzus persicae Sulzer which transmits Potato virus Y (PVY), plant pathogenic fungus such as Botrytis cinerea are able to cause damage. To determine the interactions between various bio-aggressors on potato plant defence mechanisms, (1) the effect of an attack by M. persicae followed by an attack by B. cinerea and vice versa, as well as (2) the effect of an elicitor on biological parameters of M. persicae and development of B. cinerea were assessed. On the other hand, (3) the effect of Botrytis cinerea and an elicitor on the efficiency of transmission of PVY by M. persicae was examined. The previous infection by B. cinerea resulted in a significant decrease in growth rate and a sharp reduction of M. persicae fertility, while the infection level of B. cinerea followed by M. persicae infestation was non-significant. Despite a reduction in growth and fertility of M. persicae during the first days of observation, the effect of elicitor on the biological parameters of M. persicae as well as on the development of B. cinerea was non-significant. Regarding the investigations on the PVY transmission by M. persicae, when the elicitor or Botrytis is previously applied on the plant, a significant reduction in the rate of transmission was observed. [less ▲]

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See detailReceptor expression in craniopharyngiomas causing tumor growth in pregnancy: case report and review of the literature
VROONEN, Laurent ULg; TOME, Monica; THIRY, Albert ULg et al

in Abstract book : 57èmes Journées Internationales d'Endocrinologie Clinique - Henri-Pierre Klotz (2014, June)

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See detailInvestigation of differential virus transmission efficiency in aphid strains: from biological to proteomic assays
Bosquée, Emilie ULg; Francis, Frédéric ULg

Poster (2014, June)

Aphids are well known for their variable efficiency in virus transmission to host plant. Not only aphid species but also aphid strain is an important factor to consider in the plant-aphid-virus ... [more ▼]

Aphids are well known for their variable efficiency in virus transmission to host plant. Not only aphid species but also aphid strain is an important factor to consider in the plant-aphid-virus interactions. In order to investigate these relations, different approaches should be developped from biological observations assessing the virus transmission efficiency to molecular tasks to better know the involved mechanisms in the aphid vector. After a period of virus acquisition on an artificial diet (depending on the kind of transmission, permanent or non permanent ways), the virus transmission rate were assayed and followed by the determination of the presence of virus in the aphid by PCR or immudetection. The aphids were then collected to investigate the variation of aphid proteome and potential involvement in virus interactions. Changes in protein expressions were investigated using a 2D-DIGE approach comparing most and least efficient aphid strains selecting different aphid – virus models (PVY and PLRV in potato, BYDV in wheat, CMV on tobacco) . The proteome changes were analysed using the samespot software. Protein spots with significant up- and down expressions were then mechanically picked, trypsin digested and analysed by Maldi-Tof-Tof. Significantly changed proteins were classify according to metablic pathways and biological functions. Interesting proteins found to probably interact with virus were not only detected from aphid but also from related bacterial symbionts. Theses results were discussed in order to better understand virus – vector relations and potentially promote new ways to control virus transmitted by hemipteran pest. [less ▲]

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See detailIdentifying endophenotypes of autism: a multivariate approach
Segovia-Román, Fermín ULg; Holt, Rosemary; Spencer, Michael et al

in Frontiers in Computational Neuroscience (2014), 8

The existence of an endophenotype of autism spectrum condition (ASC) has been recently suggested by several commentators. It can be estimated by finding differences between controls and people with ASC ... [more ▼]

The existence of an endophenotype of autism spectrum condition (ASC) has been recently suggested by several commentators. It can be estimated by finding differences between controls and people with ASC that are also present when comparing controls and the unaffected siblings of ASC individuals. In this work, we used a multivariate methodology applied on magnetic resonance images to look for such differences. The proposed procedure consists of combining a searchlight approach and a support vector machine classifier to identify the differences between three groups of participants in pairwise comparisons: controls, people with ASC and their unaffected siblings. Then we compared those differences selecting spatially collocated as candidate endophenotypes of ASC. [less ▲]

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See detailInhibitors of glycosylhydrolases as potential insecticides : focus on aphid model
Bosquée, Emilie ULg; Vandermoten, Sophie; Richel, Aurore ULg et al

Poster (2014, June)

Beside conventional neurotoxic compounds, new kinds of insecticides are investigated and new specific targets are in current research. According to the energy metabolic pathway, several enzymes are ... [more ▼]

Beside conventional neurotoxic compounds, new kinds of insecticides are investigated and new specific targets are in current research. According to the energy metabolic pathway, several enzymes are interesting to bring potential specific control of arthropods. Indeed, glycosylhydrolase group is very diversified from glucanases to trehalases, until chitinases. Different kinds of inhibitors were here tested to determine their potential role as new targetted aphicides. After different assays using the selected inhibitors in artificial diets, the most efficient molecules at 50-100 μg ml-1were kept for further proteomic tasks. The proteome patterns of aphids related to different inhibitor treatments were determined by two dimension electrophoresis, 2D-Differencial In Gel Expression (2D-Dige) coupled with mass spectrometry (ESI-MS-MS and Maldi-Tof-MS-MS) and data bank investigations. Particular proteins of interest were selected and accurately characterised with both fundamental but also applied views. Not only the carbohydrate metabolic pathway was disturbed with the use of glycosylhydolases inhibitors, other primary functions were also modified (amino acid synthesis, stress response, etc). This proteomic approach was discussed as an interesting and reliable tool to study the biologically involved proteins from aphids in response to specific tested enzymatic inhibitors with further ideas to be promoted as new insecticides to control insect pests. [less ▲]

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See detailEstudio ante y postmortem de las caracteristicas fisiopatologicas del tracto genital y sus factores de riesgo en vacas lecheras en el sur de Vietnam
Nguyen, Kien Cuong; Tomas Mulet, Cristina; Okouyi-Mfoumou, Marcel et al

Conference (2014, June)

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See detailColloque International "La Géographie Physique et les Risques Naturels" - Livre de résumés
Ozer, André ULg; Ozer, Pierre ULg

Book published by Université de Liège (2014)

Lors du Congrès de l’Association Internationale des Géomorphologues (AIG-IAG) qui s’est tenu à Paris en août 2013, plusieurs collègues ont demandé d’organiser à Liège le colloque inaugural de ... [more ▼]

Lors du Congrès de l’Association Internationale des Géomorphologues (AIG-IAG) qui s’est tenu à Paris en août 2013, plusieurs collègues ont demandé d’organiser à Liège le colloque inaugural de l’Association Francophone de Géographie Physique (AFGP). Profitant du ‘17th Joint Geomorphological Meeting’ déjà prévu du 30 juin au 3 juillet 2014 regroupant des géomorphologues de Belgique, France, Italie, Roumanie et Grèce, il a été proposé de nous réunir à Liège les 29 et 30 juin en prélude à cette réunion pour ‘lancer’ l’Association Francophone de Géographie Physique. Nous avons ainsi pu regrouper des amis francophones provenant de nombreux pays et réunis autour de la thématique du rôle de la géographie physique dans la gestion des risques naturels. Ce thème est cher à l’Université de Liège qui coordonne, depuis 2000, un Master complémentaire en Gestion des Risques Naturels ouvert aux pays francophones. Ce document présente les résumés des 27 communications scientifiques qui y seront présentées lors de ce Colloque intitulé "La Géographie Physique et les Risques Naturels". [less ▲]

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See detailBrussels IIbis Regulation - an appraisal of the application in Belgium
Wautelet, Patrick ULg

Report (2014)

This report, commissioned by the European Commission, undertakes to map out the practice of Belgian courts and authorities in relation to the Brussels IIbis Regulation (Regulation 2201/2003). It is based ... [more ▼]

This report, commissioned by the European Commission, undertakes to map out the practice of Belgian courts and authorities in relation to the Brussels IIbis Regulation (Regulation 2201/2003). It is based on a questionnaire submitted to experts in all Member States in the framework of a study on the assessment of the Regulation (EC) No 2201/2003 and the policy options for its amendment (call for tenders No JUST/2012/JCIV/FW/0195/A4). The purpose of this backward-looking evaluation is to assess the practical application and the effects of Regulation (EC) No 2201/2003 in terms of its relevance, coherence, effectiveness, efficiency, and EU added value and utility. [less ▲]

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See detailMembrane interactions of cyclic lipodepsipeptides from the viscosin group
Geudens, Niels; Feher, Krisztina; De Vleeschouwer et al

Poster (2014, June)

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See detailApplication of hyperspectral Raman imaging to the analysis of a self-emulsifying drug delivery system (SEDDS).
Sacre, Pierre-Yves ULg; De Bleye, Charlotte ULg; Netchacovitch, Lauranne ULg et al

Poster (2014, June)

Self-emulsifying drug delivery systems (SEDDS) are mixtures of drug and excipients that undergo emulsification when exposed to water. This pharmaceutical form is used to enhance the oral absorption of ... [more ▼]

Self-emulsifying drug delivery systems (SEDDS) are mixtures of drug and excipients that undergo emulsification when exposed to water. This pharmaceutical form is used to enhance the oral absorption of poorly water-soluble drugs. The API is finely dispersed in the excipients and forms a solid solution increasing its dissolution rate. Hyperspectral Raman imaging is a powerful tool that combines both spectral and spatial information. It returns qualitative and quantitative information useful during the development or the characterization of pharmaceutical preparations. The studied formulation consisted of a BCS 2 API (high permeability, low solubility) dispersed in excipients mainly composed of Lauroyl macrogol-32 glycerides (>50%). Two different preparations were analyzed: 100% of API dissolved and 70% of API dissolved with 30% of API powder added to the formulation. The two formulations have therefore exactly the same qualitative and quantitative composition but different spatial distribution and dispersion of the API mimicking a problem during the process. First a confocal Raman microscopic analysis was performed to evaluate the solid state of the API in the formulations. Then, an evaluation of the particle size was performed. These results are important since they can affect the bioavailability of the API and therefore its activity. Beside the microscopic scale analysis, a macroscopic imaging quantitative PLS model has been developed. The method has been validated within +/- 10% acceptance limits following the total error approach. This validated quantitative model enables reliable quantitative analysis at the pixel level of Raman images providing meaningful chemical images. [less ▲]

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See detailMulti-scale aquifer characterization and groundwater flow model parameterization using direct push technologies
Rogiers, Bart; Vienken, Thomas; Gedeon, Matej et al

in Environmental Earth Sciences (2014)

Direct push (DP) technologies are typically used for cost-effective geotechnical characterization of unconsolidated soils and sediments. In more recent developments, DP technologies have been used for ... [more ▼]

Direct push (DP) technologies are typically used for cost-effective geotechnical characterization of unconsolidated soils and sediments. In more recent developments, DP technologies have been used for efficient hydraulic conductivity (K) characterization along vertical profiles with sampling resolutions of up to a few centimetres. Until date, however, only a limited number of studies document high-resolution in situ DP data for three-dimensional conceptual hydrogeological model development and groundwater flow model parameterization. This study demonstrates how DP technologies improve building of a conceptual hydrogeological model. We further evaluate the degree to which the DP-derived hydrogeological parameter K, measured across different spatial scales, improves performance of a regional groundwater flow model. The study area covers an area of ~60 km² with two overlying, mainly unconsolidated sand, aquifers separated by a 5-7 m thick highly heterogeneous clay layer (in north-eastern Belgium). The hydrostratigraphy was obtained from an analysis of cored boreholes and about 265 cone penetration tests (CPTs). The hydrogeological parameter K was derived from a combined analysis of core and CPT data and also from hydraulic direct push tests. A total of 50 three-dimensional realizations of K were generated using a non-stationary multivariate geostatistical approach. To preserve the measured K values in the stochastic realizations, the groundwater model Krealizations were conditioned on the borehole and direct push data. Optimization was performed to select the best performing model parameterization out of the 50 realizations. This model outperformed a previously developed reference model with homogeneous K fields for all hydrogeological layers. Comparison of particle tracking simulations, based either on the optimal heterogeneous or reference homogeneous groundwater model flow fields, demonstrate the impact DP-derived subsurface heterogeneity in K can have on groundwater flow and solute transport. We demonstrated that DP technologies, especially when calibrated with site-specific data, provide high-resolution 3D subsurface data for building more reliable conceptual models and increasing groundwater flow model performance. [less ▲]

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See detailLe B.I.M et la maquette virtuelle comme moyen pédagogique permettant le rapprochement entre les cours d'informatique et l'enseignement du projet d'architecture
Boutemadja, Abdelkader ULg; Driesmans, Carine ULg; Jancart, Sylvie ULg

in Kubicki, Sylvain; Halin, Gilles; Bignon, Jean-Claude (Eds.) Scan 14 sémainaire de conception architecturale numérique : Interaction(s) des maquettes numériques (2014, June)

In the context of this paper, we pose the question of the conditions of possible link between computer courses and design projet. The integration of schools of architecture at universities is an ... [more ▼]

In the context of this paper, we pose the question of the conditions of possible link between computer courses and design projet. The integration of schools of architecture at universities is an opportunity to focus in the experiments made in this direction and to propose to implement the terms of this rapprochement. For us, it is important that this approach lies in the Bachelor years in a common core for all students. [less ▲]

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