Publications and communications of Maria Artesi

Tang, L., Swedlund, B., Dupont, S., Harland, C., Costa Monteiro Moreira, G., Durkin, K., Artesi, M., Mullaart, E., Sartelet, A., Karim, L., Coppieters, W., Georges, M., & Charlier, C. (09 March 2024). GWAS reveals determinants of mobilization rate and dynamics of an active endogenous retrovirus of cattle. Nature Communications, 15 (1), 2154. doi:10.1038/s41467-024-46434-1

Mouraux, C., FOUQUET, C., Artesi, M., Durkin, K., BULK, S., & Depierreux, F. (2024). Homozygous pathogenic MYH3 variant associated with arthrogryposis and lingual dystonia [Poster presentation]. BeSHG annual symposium 2024, Belgium.

Grentzinger, V., Durkin, K. W., Gonon Rodrigues Palmeira, L., Artesi, M., Olivier, S., & Bours, V. (24 November 2023). Identification of novel haplotypes within the challenging medically relevant FLG gene [Poster presentation]. SFMBBM PhD Day, Liège, Belgium.

Kremer, C., Torneri, A., Libin, P. J. K., Meex, C., Hayette, M.-P., Bontems, S., Durkin, K. W., Artesi, M., Bours, V., Lemey, P., Darcis, G., Hens, N., & Meuris, C. (16 June 2023). Reconstruction of SARS-CoV-2 outbreaks in a primary school using epidemiological and genomic data. Epidemics, 44, 100701. doi:10.1016/j.epidem.2023.100701

Grentzinger, V., GRISART, B., Meynsbrughen, M., Artesi, M., Gonon Rodrigues Palmeira, L., Dideberg, V., CHARLOTEAUX, B., Durkin, K. W., Brysse, A., & Bours, V. (25 May 2023). Detecting pathogenic variants in chronic kidney disease using long-read sequencing [Paper presentation]. Annual Meeting @ Living Tomorrow Vilvoorde, Vilvoorde, Belgium.

El Moussaoui, M., Maes, N., Hong, S. L., Lambert, N., Gofflot, S., DELLOT, P., Belhadj, Y., Huynen, P., Hayette, M.-P., Meex, C., Bontems, S., Defêche, J., Godderis, L., Molenberghs, G., Meuris, C., Artesi, M., Durkin, K., Rahmouni, S., GREGOIRE, C., ... DARCIS, G. (14 June 2022). Evaluation of Screening Program and Phylogenetic Analysis of SARS-CoV-2 Infections among Hospital Healthcare Workers in Liège, Belgium. Viruses, 14 (6), 1302. doi:10.3390/v14061302

Thissen, R., ARTESI, M., Durkin, K., JOSSE, C., PALMEIRA, L., & BOURS, V. (24 December 2021). Comprehensive detection of homologous recombination deficiency by Nanopore sequencing [Poster presentation]. GIGA cancer day, Liège, Belgium.

Durkin, K., Artesi, M., VAN DEN BROEKE, A., Bours, V., Hahaut, V., & Georges, M. (21 June 2021). Pooled crispr inverse pcr sequencing (pcip-seq): simultaneous sequencing of viral insertion points and the integrated viral genomes with long reads.

Van Campenhout, C., De Mendonça, R., Alexiou, B., De Clercq, S., Racu, M.-L., Royer-Chardon, C., Rusu, S., Van Eycken, M., ARTESI, M., Durkin, K., Mardulyn, P., BOURS, V., Decaestecker, C., Remmelink, M., Salmon, I., & D'Haene, N. (2021). Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Genome Sequencing from Post-Mortem Formalin-Fixed, Paraffin-Embedded Lung Tissues. The Journal of Molecular Diagnostics. doi:10.1016/j.jmoldx.2021.05.016

Tang, L., Harland, C., Durkin, K., Artesi, M., Costa Monteiro Moreira, G., Karim, L., Deckers, M., Mullaart, E., Coppieters, W., Georges, M., & Charlier, C. (11 May 2021). Evidence for inter-individual variation of ERV de novo transposition rate in the male cattle germline [Paper presentation]. The Biology of Genomes, United States.

Artesi, M.* , Hahaut, V.* , Cole, B.* , Lambrechts, L., Ashrafi, F., Marçais, A., Hermine, O., Griebel, P., Arsic, N., van der Meer, F., Burny, A., Bron, D., BIANCHI, E., DELVENNE, P., BOURS, V., Charlier, C., Georges, M., Vandekerckhove, L.* , Van den Broeke, A.* , & Durkin, K.*. (2021). PCIP-seq: simultaneous sequencing of integrated viral genomes and their integration sites with long reads. Genome Biology, 22, 97. doi:10.1186/s13059-021-02307-0

Bollen, N., Artesi, M., Durkin, K., Hong, S. L., Potter, B., Boujemla, B., Vanmechelen, B., Martí-Carreras, J., Wawina-Bokalanga, T., Meex, C., Bontems, S., Hayette, M.-P., André, E., Maes, P., Bours, V., Baele, G., & Dellicour, S. (2021). Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020. Scientific Reports, 11 (1), 18580. doi:10.1038/s41598-021-97667-9

Butera, Y., Mukantwari, E., Artesi, M., Umuringa, J. D. A., O'Toole, Á. N., Hill, V., Rooke, S., Hong, S. L., Dellicour, S., Majyambere, O., Bontems, S., Boujemla, B., Quick, J., Resende, P. C., Loman, N., Umumararungu, E., Kabanda, A., Murindahabi, M. M., Tuyisenge, P., ... Rujeni, N.*. (2021). Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity. Nature Communications, 12 (1), 5705. doi:10.1038/s41467-021-25985-7

Dellicour, S., Durkin, K., Hong, S., Vanmechelen, B., Marti-Carreras, J., Gill, M., Meex, C., Bontems, S., André, E., Gilbert, M., Walker, C., De Maio, N., Hadfield, J., Hayette, M.-P., Bours, V., Wawina-Bokalanga, T., Artesi, M., Baele, G., Maes, P., & Faria, N. R. (2021). A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages. Molecular Biology and Evolution. doi:10.1093/molbev/msaa284

Maclot, F., Bontems, S., Meex, C., Artesi, M., Beckers, P., Bours, V., Durkin, K., & Hayette, M.-P. (2021). Development of a multiplex RT-qPCR using the drop out strategy to screen the SARS-CoV-2 South African 501Y.V2 variant. The Journal of infection, 83 (1), 19-e21. doi:10.1016/j.jinf.2021.04.035

Marçais, A., Lhermite, L., Artesi, M., Laurent, C., Durkin, K., Hahaut, V., Rosewick, N., Suarez, F., Sibon, D., Cheminant, M., Avettand-Fenoël, V., Bruneau, J., Georges, M., Pique, C., Van den Broeke, A.* , Asnafi, V.* , & Hermine, O.*. (2021). Targeted deep sequencing reveals clonal and subclonal mutational signatures in Adult T-cell leukemia/lymphoma and defines an unfavorable indolent subtype. Leukemia, 35, 764-776. doi:10.1038/s41375-020-0900-3

Meuris, C., Kremer, C., Geerinck, A., Locquet, M., Bruyère, O., Defêche, J., Meex, C., Hayette, M.-P., Duchene, L., Dellot, P., Azarzar, S., Maréchal, N., Sauvage, A.-S., Frippiat, F., Giot, J.-B., Léonard, P., Fombellida, K., Moutschen, M., Durkin, K., ... Darcis, G. (2021). Transmission of SARS-CoV-2 After COVID-19 Screening and Mitigation Measures for Primary School Children Attending School in Liège, Belgium. JAMA Network Open, 4 (10), 2128757. doi:10.1001/jamanetworkopen.2021.28757

Tang, L., Harland, C., Durkin, K., Artesi, M., Costa Monteiro Moreira, G., Karim, L., Deckers, M., Mullaart, E., Coppieters, W., Georges, M., & Charlier, C. (06 October 2020). INTER-INDIVIDUAL VARIATION OF DE NOVO ERV TRANSPOSITION RATE IN THE CATTLE GERMLINE [Poster presentation]. Transposable Elements, United States.

Artesi, M., Bontems, S., Göbbels, P., Franckh, M., Maes, P., BOREUX, R., MEEX, C., MELIN, P., Hayette, M.-P., Bours, V., & Durkin, K. (2020). A recurrent mutation at position 1 26,340 of SARS-CoV-2 is associated with failure of the E-gene qRT-PCR utilized in a commercial dual-target diagnostic assay. Journal of Clinical Microbiology. doi:10.1128/JCM.01598-20

Artesi, M., Tamma, N., Deckers, M., Karim, L., Coppieters, W., Van den Broeke, A., Georges, M., Charlier, C., & Durkin, K. (2020). Colour-sidedness in Gloucester cattle is associated with a complex structural variant impacting regulatory elements downstream of KIT. Animal Genetics. doi:10.1111/age.12932

Rosewick, N.* , Hahaut, V.* , Durkin, K., Artesi, M., Karpe, S., Wayet, J., Griebel, P., Arsic, N., Marçais, A., Hermine, O., Burny, A., Georges, M., & Van den Broeke, A. (2020). An Improved Sequencing-Based Bioinformatics Pipeline to Track the Distribution and Clonal Architecture of Proviral Integration Sites. Frontiers in Microbiology, 11, 587306. doi:10.3389/fmicb.2020.587306

Artesi, M., Hahaut, V., Ashrafi, F., Marcais, A., Hermine, O., Griebel, P., Arsic, N., van der Meer, F., Burny, A., Bron, D., Charlier, C., Georges, M., Van den Broeke, A., & Durkin, K. (2019). Pooled CRISPR Inverse PCR sequencing (PCIP-seq): simultaneous sequencing of retroviral insertion points and the associated provirus in thousands of cells with long reads 558130. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/237583. doi:10.1101/558130

Galli, V., Nixon, C. C., Strbo, N., Artesi, M., de Castro-Amarante, M. F., McKinnon, K., Fujikawa, D., Omsland, M., Washington-Parks, R., Romero, L., Caruso, B., Durkin, K., Brown, S., Karim, B., Vaccari, M., Jacobson, S., Zack, J. A., Van den Broeke, A., Pise-Masison, C., ... Silvestri, G. (2019). Essential Role of Human T Cell Leukemia Virus Type 1 orf-I in Lethal Proliferation of CD4+ Cells in Humanized Mice. Journal of Virology, 93 (19 e00565-19). doi:10.1128/JVI.00565-19

Georges, M., Van den Broeke, A., Durkin, K., Artesi, M., Hahaut, V., & Rosewick, N. (11 October 2018). MONITORING METHOD FOR ADULT T-CELL LEUKEMIA/LYMPHOMA (ATL).

Pérès, E., Blin, J., P. Ricci, E., Artesi, M., Hahaut, V., Van den Broeke, A., Corbin, A., Gazzolo, L., Ratner, L., Jalinot, P., & Duc Dodon, M. (2018). PDZ domain-binding motif of Tax sustains T-cell proliferation in HTLV-1-infected humanized mice. PLoS Pathogens. doi:10.1371/journal.ppat.1006933

Hahaut, V., Rosewick, N., Artesi, M., Durkin, K., Burny, A., Bron, D., Georges, M., & Van den Broeke, A. (02 February 2018). Improving the bioinformatics analysis of HTS clonality data in virus-induced leukemia [Poster presentation]. Télévie Cancer Seminar 2018.

Durkin, K., Artesi, M., Hahaut, V., Rosewick, N., Griebel, P., Arsic, N., Burny, A., Georges, M., & Van den Broeke, A. (21 September 2017). The Landscape And Evolution Of Somatic Mutations In Bovine Leukemia Virus Induced Tumors [Paper presentation]. Animal Genetics & Diseases, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.

Durkin, K., Artesi, M., Hahaut, V., Rosewick, R., Griebel, P., Arsic, N., Burny, A., Georges, M., & Van den Broeke, A. (July 2017). Somatic Structural And Numerical Aberrations In Bovine Leukemia Virus Induced Tumors [Poster presentation]. 36th International Society for Animal Genetics Conference, Dublin, Ireland.

Percher, F., Curis, C., Peres, E., Artesi, M., Rosewick, N., Jeannin, P., Gessain, A., Gout, O., Mahieux, R., Ceccaldi, P.-E., Van den Broeke, A., Duc Dodon, M., & Afonso, P. V. (22 June 2017). HTLV-1-induced leukotriene B4 secretion by T cells promotes T cell recruitment and virus propagation. Nature Communications, 8, 15890. doi:10.1038/ncomms15890

Rosewick, N.* , Durkin, K.* , Artesi, M.* , Marçais, A., Hahaut, V., Griebel, P., Avettand-Fenoel, V., Burny, A., Charlier, C., Hermine, O., Georges, M., & Van den Broeke, A. (23 May 2017). Cis-perturbation of cancer drivers by the HTLV-1/BLV proviruses is an early determinant of leukemogenesis. Nature Communications, 8. doi:10.1038/ncomms15264

Hahaut, V., Artesi, M., Durkin, K., Rosewick, N., Griebel, P., Natasa, A., Burny, A., Georges, M., & Van den Broeke, A. (08 March 2017). Investigating non-coding viral transcripts in Bovine Leukemia Virus induced leukemia [Poster presentation]. 18th International Conference on Human Retrovirology: HTLV and Related Viruses, Tokyo, Japan.

Durkin, K., Artesi, M., Hahaut, V., Rosewick, N., Griebel, P., Arsic, N., Burny, A., Georges, M., & Van den Broeke, A. (March 2017). Structural And Numerical Somatic Changes In BLV Induced Tumors [Poster presentation]. 18th International Conference on Human Retorovirology HTLV and Related Viruses, Tokyo, Japan.

Artesi, M., Marcais, A., Durkin, K., Rosewick, N., Hahaut, V., Suarez, F., Trinquand, A., Lhermitte, L., Asnafi, V., Avettand-Fenoel, V., Burny, A., Georges, M., Hermine, O., & Van den Broeke, A. (2017). Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia, 31 (11), 2532-2535. doi:10.1038/leu.2017.260

Marçais, A., Artesi, M., Durkin, K., Hahaut, V., Suarez, F., Sibon, D., Cheminand, M., Delarue, R., Lhermitte, L., Asnafi, V., Avettand Fenoel, V., Georges, M., Van den Broeke, A., & Hermine, O. (2017). Improved high throughput DNA-seq based mapping of HTLV-1 integration sites: a tool to define response to treatment, ATL prognosis and guide therapeutic strategies [Paper presentation]. 18th international conference on human retrovirology - HTLV and related viruses, Tokyo, Japan.

Durkin, K., Rosewick, N., Artesi, M., Hahaut, V., Griebel, P., Arsic, N., Burny, A., Georges, M., & Van den Broeke, A. (21 May 2016). Identification and characterization of novel bovine leukemia virus (BLV) antisense transcripts in leukemic and pre-leukemic clones [Paper presentation]. HTLV European Research Network Meeting 2016, Bucharest, Romania.

Artesi, M., Durkin, K., Rosewick, N., Georges, M., & Van den Broeke, A. (2016). Improving the methodology for high throughput mapping of proviral integration sites [Paper presentation]. The HTLV european research network meeting, Bucharest, Romania.

Durkin, K., Rosewick, N., Artesi, M., Hahaut, V., Griebel, P., Arsic, N., Burny, A., Georges, M., & Van den Broeke, A. (2016). Characterization of novel Bovine Leukemia Virus (BLV) antisense transcripts by deep sequencing reveals constitutive expression in tumors and transcriptional interaction with viral microRNAs. Retrovirology, 13 (1), 33. doi:10.1186/s12977-016-0267-8

Durkin, K., Artesi, M., Rosewick, N., Marçais, A., Hermine, O., Georges, M., & Van den Broeke, A. (28 August 2015). Improving the methodology for the detection of proviral integration sites in the host genome via high throughput sequencing. Retrovirology, 12 (1).

Rosewick, N., Durkin, K., Marçais, A., Artesi, M., Hermine, O., Charlier, C., Georges, M., & Van den Broeke, A. (28 August 2015). HTLV-1/BLV antisense-RNA dependent host gene perturbation in pre-leukemic and leukemic clones. Retrovirology, 12 (1).

Durkin, K., Artesi, M., Rosewick, N., Georges, M., & Van den Broeke, A. (May 2015). Improving proviral integration site detection with high throughput sequencing [Poster presentation]. The biology of genomes, Cold Spring Harbor, United States - New York.

Artesi, M., Kroonen, J., Bredel, M., Nguyen-Khac, M., Deprez, M., SCHOYSMAN, L., Poulet, C., Chakravarti, A., Kim, H., Scholtens, D., Seute, T., ROGISTER, B., BOURS, V., & Robe, P. (2015). Connexin 30 expression inhibits growth of human malignant gliomas but protects them against radiation therapy. Neuro-Oncology. doi:10.1093/neuonc/nou215

Artesi, M. (2012). Connexin30: Role as a tumor suppressor and influence on radiation sensitivity in gliomas [Doctoral thesis, ULiège - Université de Liège]. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/235971

KROONEN, J.* , Artesi, M.* , CAPRARO, V., Nguyen-Khac, M.-T., Willems, M., Chakravarti, A., Bours, V., & Robe, P. (2012). Casein kinase 2 inhibition modulates the DNA damage response but fails to radiosensitize malignant glioma cells. International Journal of Oncology, 41 (2), 776-82. doi:10.3892/ijo.2012.1489

Robe, P., Martin, D., Nguyen-Khac, M.-T., Artesi, M., Deprez, M., Albert, A., Vanbelle, S., Califice, S., Bredel, M., & Bours, V. (2009). Early termination of ISRCTN45828668, a phase 1/2 prospective, randomized study of sulfasalazine for the treatment of progressing malignant gliomas in adults. BMC Cancer, 9, 372. doi:10.1186/1471-2407-9-372