Rigolet, A., Argüelles Arias, A., Anckaert, A., Quinton, L., Rigali, S., Tellatin, D., Burguet, P., & Ongena, M. (2023). Lipopeptides as rhizosphere public goods for microbial cooperation. Microbiology Spectrum, 0310623. doi:10.1128/spectrum.03106-23 |
Kerff, F., Jourdan, S., Francis, I. M., Deflandre, B., Ribeiro Monteiro, S., Stulanovic, N., Loria, R., & Rigali, S. (2023). Common scab disease: structural basis of elicitor recognition in pathogenic Streptomyces species. Microbiology Spectrum, 0197523. doi:10.1128/spectrum.01975-23 |
Francis, I. M., Bergin, D., Deflandre, B., Gupta, S., Salazar, J. J. C., Villagrana, R., Stulanovic, N., Ribeiro Monteiro, S., Kerff, F., Loria, R., & Rigali, S. (01 February 2023). Role of Alternative Elicitor Transporters in the Onset of Plant Host Colonization by Streptomyces scabiei 87-22. Biology, 12 (2), 234. doi:10.3390/biology12020234 |
Martinet, L., Naômé, A., Rezende, L. C. D., Tellatin, D., Pignon, B., Docquier, J.-D., Sannio, F., Baiwir, D., Mazzucchelli, G., Frederich, M., & Rigali, S. (06 January 2023). Lunaemycins, New Cyclic Hexapeptide Antibiotics from the Cave Moonmilk-Dweller Streptomyces lunaelactis MM109T. International Journal of Molecular Sciences, 24 (2), 1114. doi:10.3390/ijms24021114 |
Deflandre, B., Jadot, C., Planckaert, S., Thiébaut, N., Stulanovic, N., Herman, R., Devreese, B., Kerff, F., & Rigali, S. (01 August 2022). Structure and Function of BcpE2, the Most Promiscuous GH3-Family Glucose Scavenging Beta-Glucosidase. MBio, 13 (4), 0093522. doi:10.1128/mbio.00935-22 |
Anderssen, S., Naômé, A., Jadot, C., Brans, A., Tocquin, P., & Rigali, S. (2022). AURTHO: Autoregulation of transcription factors as facilitator of cis-acting element discovery. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms, 194847. doi:10.1016/j.bbagrm.2022.194847 |
Tellatin, D., Rigolet, A., Burguet, P., Martinet, L., Stulanovic, N., Quinton, L., Ongena, M., & Rigali, S. (19 June 2022). Bacterial Interactions : Influence on Growth and Secondary Metabolism [Poster presentation]. International Society for the Biology of Actinomycetes (ISBA), Toronto, Canada. |
Martinet, L., Baiwir, D., Mazzucchelli, G., & Rigali, S. (26 May 2022). Structure of New Ferroverdins Recruiting Unconventional Ferrous Iron Chelating Agents. Biomolecules, 12 (6), 752. doi:10.3390/biom12060752 |
Anderssen, S., Naomé, A., Jadot, C., Brans, A., Tocquin, P., & Rigali, S. (2022). AURTHO: autoregulation as facilitator of cis-acting element discovery of orthologous transcription factors. Biorxiv. doi:10.1101/2022.04.06.487287 |
Deflandre, B., Jadot, C., Planckaert, S., Thiébaut, N., Stulanovic, N., Herman, R., Devreese, B., Kerff, F., & Rigali, S. (2022). Structure and function of BcpE2, the most promiscuous GH3-family beta-glucosidase for scavenging glucose from heterosides. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/268016. doi:10.1101/2022.01.22.477351 |
Deflandre, B.* , Stulanovic, N.* , Planckaert, S., Anderssen, S., Bonometti, B., Karim, L., Coppieters, W., Devreese, B., & Rigali, S. (2022). The virulome of Streptomyces scabiei in response to cello- oligosaccharide elicitors. Microbial Genomics. doi:10.1099/mgen.0.000760 * These authors have contributed equally to this work. |
Deflandre, B., & Rigali, S. (December 2021). Old Enzyme, New Role: The β-Glucosidase BglC of Streptomyces scabiei Interferes with the Plant Defense Mechanism by Hydrolyzing Scopolin. Biophysica, 2 (1), 1-7. doi:10.3390/biophysica2010001 |
Planckaert, S., Deflandre, B., de Vries, A.-M., Ameye, M., Martins, J., Audenaert, K., Rigali, S., & Devreese, B. (04 August 2021). Identification of Novel Rotihibin Analogues in Streptomyces scabies, Including Discovery of its Biosynthetic Gene Cluster. Microbiology Spectrum, 9 (1). doi:10.1128/Spectrum.00571-21 |
Martinet, L., Naômé, A., Baiwir, D., De Pauw, E., Mazzucchelli, G., & Rigali, S. (2020). On the Risks of Phylogeny-Based Strain Prioritization for Drug Discovery: Streptomyces lunaelactis as a Case Study. Biomolecules, 10 (7). doi:10.3390/biom10071027 |
Tenconi, E., Traxler, M., Tellatin, D., van Wezel, G. P., & Rigali, S. (2020). Prodiginines Postpone the Onset of Sporulation in Streptomyces coelicolor. Antibiotics (Basel, Switzerland), 9 (12). doi:10.3390/antibiotics9120847 |
Martinet, L., Naomé, A., Deflandre, B., Maciejewska, M., Tellatin, D., Tenconi, E., Smargiasso, N., De Pauw, E., van Wezel, G. P., & Rigali, S. (2019). A Single Biosynthetic Gene Cluster Is Responsible for the Production of Bagremycin Antibiotics and Ferroverdin Iron Chelators. MBio, 10 (4). doi:10.1128/mBio.01230-19 |
Deflandre, B., Jourdan, S., Francis, I. M., Loria, R., & Rigali, S. (18 May 2018). Thaxtomin A: a promising alternative to synthetic herbicides [Poster presentation]. Bioforum 2018, Liège, Belgium. |
Naomé, A., Maciejewska, M., Calusinska, M., Martinet, L., Anderssen, S., Adam, D., Tenconi, E., Deflandre, B., Coppieters, W., Karim, L., Hanikenne, M., Baurain, D., Delfosse, P., van Wezel, G., & Rigali, S. (May 2018). Complete Genome Sequence of Streptomyces lunaelactis MM109T, Isolated from Cave Moonmilk Deposits. Genome Announcements, 6 (21), 00435-18. doi:10.1128/genomeA.00435-18 |
Adam, D., Maciejewska, M., Naomé, A., Martinet, L., Coppieters, W., Karim, L., Baurain, D., & Rigali, S. (2018). Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits. Antibiotics, 7(2) (28), 10.3390/antibiotics7020028. doi:10.3390/antibiotics7020028 |
Jourdan, S.* , Francis, I.* , Deflandre, B., Tenconi, E., Riley, J., Planckaert, S., Tocquin, P., Martinet, L., Devreese, B., Loria, R.* , & Rigali, S.*. (2018). Contribution of the β-glucosidase BglC to the onset of the pathogenic lifestyle of Streptomyces scabies. Molecular Plant Pathology. doi:10.1111/mpp.12631 * These authors have contributed equally to this work. |
Maciejewska, M., Całusińska, M., Cornet, L., Adam, D., Pessi, I. S., Malchair, S., Delfosse, P., Baurain, D., Barton, H., Carnol, M., & Rigali, S. (2018). High-throughput Sequencing Analysis of the Actinobacterial Spatial Diversity in Moonmilk Deposits. Antibiotics, 7(2) (28). doi:10.3390/antibiotics7020027 |
Tenconi, E., Traxler, M., Hoebreck, C., van Wezel, G., & Rigali, S. (2018). Production of prodiginines is part of a programmed cell death process in Streptomyces coelicolor. Frontiers in Microbiology. doi:10.3389/fmicb.2018.01742 |
Jourdan, S., Francis, J., Deflandre, B., Loria, R., & Rigali, S. (2017). Tracking the Subtle Mutations Driving Host Sensing by the Plant Pathogen Streptomyces scabies. mSphere. doi:10.1128/mSphere.00367-16 |
Maciejewska, M., Adam, D., Naomé, A., Martinet, L., Tenconi, E., Calusinska, M., Delfosse, P., Hanikenne, M., Baurain, D., Compère, P., Carnol, M., Barton, H., & Rigali, S. (2017). Assessment of the Potential Role of Streptomyces in Cave Moonmilk Formation. Frontiers in Microbiology, 8. doi:10.3389/fmicb.2017.01181 |
Tocquin, P., Naomé, A., Jourdan, S., Anderssen, S., Hiard, S., van Wezel, G., Hanikenne, M., Baurain, D., & Rigali, S. (2016). PREDetector 2.0: Online and Enhanced Version of the Prokaryotic Regulatory Elements Detector Tool. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/203998. doi:10.1101/084780 |
Maciejewska, M.* , Adam, D.* , Martinet, L., Naomé, A., Całusińska, M., Delfosse, P., Carnol, M., Barton, H., HAYETTE, M.-P., Smargiasso, N., De Pauw, E., Hanikenne, M., Baurain, D., & Rigali, S. (2016). A Phenotypic and Genotypic Analysis of the Antimicrobial Potential of Cultivable Streptomyces Isolated from Cave Moonmilk Deposits. Frontiers in Microbiology. doi:10.3389/fmicb.2016.01455 * These authors have contributed equally to this work. |
Jourdan, S.* , Francis, I.* , Kim, M., Salazar, J., Planckaert, S., Frère, J.-M., Matagne, A., Kerff, F., Devreese, B., Loria, R., & Rigali, S. (2016). The CebE/MsiK Transporter is a Doorway to the Cello-oligosaccharide-mediated Induction of Streptomyces scabies Pathogenicity. Scientific Reports. doi:10.1038/srep27144 * These authors have contributed equally to this work. |
Urem, M., van Rossum, T., Bucca, G., Moolenaar, G. F., Laing, E., Swiatek-Połatynska, M., Willemse, J., Tenconi, E., Rigali, S., Goosen, N., Smith, C., & van Wezel, G. P. (2016). OsdR of Streptomyces coelicolor and the Dormancy Regulator DevR of Mycobacterium tuberculosis Control Overlapping Regulons. mSystems. doi:10.1128/mSystems.00014-16 |
Arguelles Arias, A.* , Lambert, S.* , Martinet, L., Adam, D., Tenconi, E., HAYETTE, M.-P., Ongena, M., & Rigali, S. (2015). Growth of desferrioxamine deficient Streptomyces mutants through xenosiderophore piracy of airborne fungal contaminations. FEMS Microbiology Ecology. doi:10.1093/femsec/fiv080 * These authors have contributed equally to this work. |
Francis, I.* , Jourdan, S.* , Fanara, S., Loria, R., & Rigali, S. (2015). The Cellobiose Sensor CebR is the Gatekeeper of Streptomyces scabies Pathogenicity. MBio. doi:10.1128/mBio.02018-14 * These authors have contributed equally to this work. |
Liao, C.-H., Xu, Y., Rigali, S., & Ye, B.-C. (2015). DasR is a pleiotropic regulator required for antibiotic production, pigment biosynthesis, and morphological development in Saccharopolyspora erythrae. Applied Microbiology and Biotechnology. doi:10.1007/s00253-015-6892-7 |
Maciejewska, M., Stelmach Pessi, I., Arguelles Arias, A., Noirfalise, P., Luis, G., Ongena, M., Barton, H., Carnol, M., & Rigali, S. (2015). Streptomyces lunaelactis sp. nov., a Novel Ferroverdin A-Producing Streptomyces Species Isolated from a Moonmilk Speleothem. Antonie van Leeuwenhoek, 107, 519–531. doi:10.1007/s10482-014-0348-4 |
Rigali, S., Nivelle, R., & Tocquin, P. (2015). On the necessity and biological significance of threshold-free regulon prediction outputs. Molecular Biosystems, 11, 333-337. doi:10.1039/C4MB00485J |
Świątek-Połatyńska, M., Bucca, G., Laing, E., Gubbens, J., Titgemeyer, F., Smith, C., Rigali, S., & van Wezel, G. (2015). Genome-Wide Analysis of In Vivo Binding of the Master Regulator DasR in Streptomyces coelicolor Identifies Novel Non-Canonical Targets. PLoS ONE. doi:10.1371/journal.pone.0122479 |
Tenconi, E., Urem, M., Świątek-Połatyńska, M., Titgemeyer, F., Muller, Y., van Wezel, G., & Rigali, S. (2015). Multiple allosteric effectors control the affinity of DasR for its target sites. Biochemical and Biophysical Research Communications. doi:10.1016/j.bbrc.2015.06.152 |
Jourdan, S., Francis, I., Loria, R., & Rigali, S. (October 2014). The cellobiose-sensor CebR is the gatekeeper of Streptomyces scabies pathogenicity [Poster presentation]. XVII. International Symposium on the Biology of Actinomycetes, Kusadasi, Turkey. |
Lambert, S.* , Traxler, M. F.* , Craig, M., Maciejewska, M., Ongena, M., van Wezel, G. P., Kolter, R., & Rigali, S. (2014). Altered Desferrioxamine-mediated Iron Utilization is a Common Trait of bald Mutants of Streptomyces coelicolor. Metallomics. doi:10.1039/C4MT00068D * These authors have contributed equally to this work. |
Liao, C.* , Rigali, S.* , Licona-Cassani, C., Marcellin, E., Nielsen, L., & Ye, B.-C. (2014). Control of chitin and N-acetylglucosamine utilization in Saccharopolyspora erythraea. Microbiology. doi:10.1099/mic.0.078261-0 * These authors have contributed equally to this work. |
Craig, M., Lambert, S., Tenconi, E., Jourdan, S., Maciejewska, M., Ongena, M., & Rigali, S. (October 2012). N-Acetylglucosamine-Mediated Inhibition of Siderophore Biosynthesis Counteracts the suicidal Tendencies of Streptomyces coelicolor [Poster presentation]. Actinobacteria within soils : Capacities for mutualism, symbiosis and pathogenesis, Germany. |
Craig, M., Lambert, S., Jourdan, S., Tenconi, E., Colson, S., Maciejewska, M., Martin, J. F., Ongena, M., van Wezel, G. P., & Rigali, S. (2012). Unsuspected Control of Siderophore production by N-acetylglucosamine in Streptomycetes. Environmental Microbiology Reports. doi:10.1111/j.1758-2229.2012.00354.x |
Dwarakanath, S., Chaplin, A., Hough, M., Rigali, S., Vijgenboom, E., & Worrall, J. (2012). The response to copper stress in Streptomyces lividans extends beyond genes under the direct control of a Copper sensitive operon Repressor protein (CsoR). Journal of Biological Chemistry. doi:10.1074/jbc.M112.352740 |
Swiatek, Tenconi, E., Rigali, S., & van Wezel, G. (2012). Functional Analysis of the N-Acetylglucosamine Metabolic Genes of Streptomyces coelicolor and Role in Control of Development and Antibiotic Production. Journal of Bacteriology, 194 (5), 1136-44. doi:10.1128/JB.06370-11 |
Tenconi, E., Jourdan, S., Motte, P., Virolle, M., & Rigali, S. (2012). Extracellular Sugar-Phosphates are Assimilated by Streptomyces in a PhoP-dependent Manner. Antonie van Leeuwenhoek. doi:10.1007/s10482-012-9763-6 |
Bertram, R.* , Rigali, S.* , Wood, N., Lulko, A. T., Kuipers, O. P., & Titgemeyer, F. (2011). Regulon of the N-acetylglucosamine utilization regulator NagR in Bacillus subtilis. Journal of Bacteriology, 193 (14), 3525-36. doi:10.1128/JB.00264-11 * These authors have contributed equally to this work. |
Girard, G., & Rigali, S. (2011). Role of the phenazine-inducing protein Pip in stress resistance of Pseudomonas chlororaphis. Microbiology, 157 (2), 398-407. doi:10.1099/mic.0.043075-0 |
Nothaft, H., Rigali, S., Boomsma, B., Swiatek, M., McDowall, K. J., van Wezel, G. P., & Titgemeyer, F. (2010). The permease gene nagE2 is the key to N-acetylglucosamine sensing and utilization in Streptomyces coelicolor and is subject to multi-level control. Molecular Microbiology, 75 ((5)), 1133-44. doi:10.1111/j.1365-2958.2009.07020.x |
Hoskisson, P., & Rigali, S. (2009). Chapter 1 Variation in Form and Function The Helix-Turn-Helix Regulators of the GntR Superfamily. Advances in Applied Microbiology, Chapitre 1. doi:10.1016/S0065-2164(09)69001-8 |
Colson, S., van Wezel, G. P., Craig, M., Noens, E. E., Nothaft, H., Mommaas, A. M., Titgemeyer, F., Joris, B., & Rigali, S. (February 2008). The Chitobiose-Binding Protein, DasA, Acts as a Link between Chitin Utilization and Morphogenesis in Streptomyces Coelicolor. Microbiology, 154 (Pt 2), 373-82. doi:10.1099/mic.0.2007/011940-0 |
Rigali, S., Titgemeyer, F., Barends, S., Mulder, S., Thomae, A., Hopwood, D., & van Wezel, G. (2008). Feast or famine: the global regulator DasR links nutrient stress to antibiotic production by Streptomyces. EMBO Reports, 9 (7), 670-675. doi:10.1038/embor.2008.83 |
Hiard, S., Rigali, S., Colson, S., Marée, R., & Wehenkel, L. (12 November 2007). PREDetector : Prokaryotic Regulatory Element Detector [Poster presentation]. Benelux Bioinformatics Conference 2007, Leuven, Belgium. |
Hiard, S., Marée, R., Colson, S., Hoskisson, P. A., Titgemeyer, F., van Wezel, G. P., Joris, B., Wehenkel, L., & Rigali, S. (June 2007). PREDetector: A new tool to identify regulatory elements in bacterial genomes. Biochemical and Biophysical Research Communications, 357 (4), 861-864. doi:10.1016/j.bbrc.2007.03.180 |
Hiard, S., Rigali, S., Colson, S., Marée, R., & Wehenkel, L. (15 February 2007). PREDetector : Prokaryotic Regulatory Element Detector [Poster presentation]. Bioinformatics and Modeling : From genomes to network, Liège, Belgium. |
Colson, S., Stephan, J., Hertrich, T., Saito, A., van Wezel, G. P., Titgemeyer, F., & Rigali, S. (2007). Conserved cis-acting elements upstream of genes composing the chitinolytic system of streptomycetes are DasR-responsive elements. Journal of Molecular Microbiology and Biotechnology, 12 (1-2), 60-66. doi:10.1159/000096460 |
Rigali, S., Nothaft, H., Noens, E. E. E., Schlicht, M., Colson, S., Müller, M., Joris, B., Koerten, H. K., Hopwood, D. A., Titgemeyer, F., & van Wezel, G. P. (September 2006). The sugar phosphotransferase system of Streptomyces coelicolor is regulated by the GntR-family regulator DasR and links N-acetylglucosamine metabolism to the control of development. Molecular Microbiology, 61 (5), 1237-1251. doi:10.1111/j.1365-2958.2006.05319.x |
Hoskisson, P. A., Rigali, S., Fowler, K., Findlay, K. C., & Buttner, M. J. (July 2006). DevA, a GntR-like transcriptional regulator required for development in Streptomyces coelicolor. Journal of Bacteriology, 188 (14), 5014-5023. doi:10.1128/JB.00307-06 |
Hiard, S., Rigali, S., Colson, S., Marée, R., & Wehenkel, L. (17 May 2006). PreDetector : Prokaryotic Regulatory Element Detector [Poster presentation]. 10th Bioforum, Liège, Belgium. |
Girard, G., Barends, S., Rigali, S., van Rij, E. T., Lugtenberg, B. J., & Bloemberg, G. V. (2006). Pip, a novel activator of phenazine biosynthesis in Pseudomonas chlororaphis PCL1391. Journal of Bacteriology, 188 (23), 8283-8293. doi:10.1128/JB.00893-06 |
De Lemos Esteves, F., Gouders, T., Lamotte-Brasseur, J., Rigali, S., & Frère, J.-M. (February 2005). Improving the alkalophilic performances of the Xyl1 xylanase from Streptomyces sp S38: Structural comparison and mutational analysis. Protein Science: A Publication of the Protein Society, 14 (2), 292-302. doi:10.1110/ps.04978705 |
Derouaux, A., Dehareng, D., Lecocq, E., Halici, S., Nothaft, H., Giannotta, F., Moutzourelis, G., Dusart, J., Devreese, B., Titgemeyer, F., Van Beeumen, J., & Rigali, S. (17 December 2004). Crp of Streptomyces Coelicolor Is the Third Transcription Factor of the Large Crp-Fnr Superfamily Able to Bind Camp. Biochemical and Biophysical Research Communications, 325 (3), 983-90. doi:10.1016/j.bbrc.2004.10.143 |
Rigali, S., Schlicht, M., Hoskisson, P., Nothaft, H., Merzbacher, M., Joris, B., & Titgemeyer, F. (June 2004). Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships. Nucleic Acids Research, 32 (11), 3418-3426. doi:10.1093/nar/gkh673 |
Derouaux, A., Halici, S., Nothaft, H., Neutelings, T., Moutzourelis, G., Dusart, J., Titgemeyer, F., & Rigali, S. (May 2004). Erratum to : Deletion of a cyclic AMP receptor protein homologue diminishes germination and affects morphological development of Streptomyces coelicolor (vol 186, pg 1897, 2004). Journal of Bacteriology, 186 (10), 3282-3282. doi:10.1128/JB.186.10.3282.2004 |
Derouaux, A., Halici, S., Nothaft, H., Neutelings, T., Moutzourelis, G., Dusart, J., Titgemeyer, F., & Rigali, S. (March 2004). Deletion of a cyclic AMP receptor protein homologue diminishes germination and affects morphological development of Streptomyces coelicolor. Journal of Bacteriology, 186 (6), 1893-1897. doi:10.1128/JB.186.6.1893-1897.2004 |
Giannotta, F., Georis, J., Rigali, S., Virolle, M. J., & Dusart, J. (December 2003). Site-directed mutagenesis of conserved inverted repeat sequences in the xylanase C promoter region from Streptomyces sp EC3. Molecular Genetics and Genomics, 270 (4), 337-346. doi:10.1007/s00438-003-0927-y |
Lee, M. H., Scherer, K., Rigali, S., & Golden, J. W. (2003). PlmA, a new member of the GntR family, has plasmid maintenance functions in Anabaena sp. strain PCC 7120. Journal of Bacteriology, 185 (15), 4315-4325. doi:10.1128/JB.185.15.4315-4325.2003 |
Rigali, S., Derouaux, A., Giannotta, F., & Dusart, J. (12 April 2002). Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. Journal of Biological Chemistry, 277 (15), 12507-12515. doi:10.1074/jbc.M110968200 |