Publications and communications of Sébastien Rigali

Rigolet, A., Argüelles Arias, A., Anckaert, A., Quinton, L., Rigali, S., Tellatin, D., Burguet, P., & Ongena, M. (2023). Lipopeptides as rhizosphere public goods for microbial cooperation. Microbiology Spectrum, 0310623. doi:10.1128/spectrum.03106-23

Kerff, F., Jourdan, S., Francis, I. M., Deflandre, B., Ribeiro Monteiro, S., Stulanovic, N., Loria, R., & Rigali, S. (2023). Common scab disease: structural basis of elicitor recognition in pathogenic Streptomyces species. Microbiology Spectrum, 0197523. doi:10.1128/spectrum.01975-23

Francis, I. M., Bergin, D., Deflandre, B., Gupta, S., Salazar, J. J. C., Villagrana, R., Stulanovic, N., Ribeiro Monteiro, S., Kerff, F., Loria, R., & Rigali, S. (01 February 2023). Role of Alternative Elicitor Transporters in the Onset of Plant Host Colonization by Streptomyces scabiei 87-22. Biology, 12 (2), 234. doi:10.3390/biology12020234

Martinet, L., Naômé, A., Rezende, L. C. D., Tellatin, D., Pignon, B., Docquier, J.-D., Sannio, F., Baiwir, D., Mazzucchelli, G., Frederich, M., & Rigali, S. (06 January 2023). Lunaemycins, New Cyclic Hexapeptide Antibiotics from the Cave Moonmilk-Dweller Streptomyces lunaelactis MM109T. International Journal of Molecular Sciences, 24 (2), 1114. doi:10.3390/ijms24021114

Deflandre, B., Jadot, C., Planckaert, S., Thiébaut, N., Stulanovic, N., Herman, R., Devreese, B., Kerff, F., & Rigali, S. (01 August 2022). Structure and Function of BcpE2, the Most Promiscuous GH3-Family Glucose Scavenging Beta-Glucosidase. MBio, 13 (4), 0093522. doi:10.1128/mbio.00935-22

Anderssen, S., Naômé, A., Jadot, C., Brans, A., Tocquin, P., & Rigali, S. (2022). AURTHO: Autoregulation of transcription factors as facilitator of cis-acting element discovery. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms, 194847. doi:10.1016/j.bbagrm.2022.194847

Tellatin, D., Rigolet, A., Burguet, P., Martinet, L., Stulanovic, N., Quinton, L., Ongena, M., & Rigali, S. (19 June 2022). Bacterial Interactions : Influence on Growth and Secondary Metabolism [Poster presentation]. International Society for the Biology of Actinomycetes (ISBA), Toronto, Canada.

Martinet, L., Baiwir, D., Mazzucchelli, G., & Rigali, S. (26 May 2022). Structure of New Ferroverdins Recruiting Unconventional Ferrous Iron Chelating Agents. Biomolecules, 12 (6), 752. doi:10.3390/biom12060752

Anderssen, S., Naomé, A., Jadot, C., Brans, A., Tocquin, P., & Rigali, S. (2022). AURTHO: autoregulation as facilitator of cis-acting element discovery of orthologous transcription factors. Biorxiv. doi:10.1101/2022.04.06.487287

Deflandre, B., Jadot, C., Planckaert, S., Thiébaut, N., Stulanovic, N., Herman, R., Devreese, B., Kerff, F., & Rigali, S. (2022). Structure and function of BcpE2, the most promiscuous GH3-family beta-glucosidase for scavenging glucose from heterosides. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/268016. doi:10.1101/2022.01.22.477351

Deflandre, B.* , Stulanovic, N.* , Planckaert, S., Anderssen, S., Bonometti, B., Karim, L., Coppieters, W., Devreese, B., & Rigali, S. (2022). The virulome of Streptomyces scabiei in response to cello- oligosaccharide elicitors. Microbial Genomics. doi:10.1099/mgen.0.000760
* These authors have contributed equally to this work.

Deflandre, B., & Rigali, S. (December 2021). Old Enzyme, New Role: The β-Glucosidase BglC of Streptomyces scabiei Interferes with the Plant Defense Mechanism by Hydrolyzing Scopolin. Biophysica, 2 (1), 1-7. doi:10.3390/biophysica2010001

Planckaert, S., Deflandre, B., de Vries, A.-M., Ameye, M., Martins, J., Audenaert, K., Rigali, S., & Devreese, B. (04 August 2021). Identification of Novel Rotihibin Analogues in Streptomyces scabies, Including Discovery of its Biosynthetic Gene Cluster. Microbiology Spectrum, 9 (1). doi:10.1128/Spectrum.00571-21

Martinet, L., Naômé, A., Baiwir, D., De Pauw, E., Mazzucchelli, G., & Rigali, S. (2020). On the Risks of Phylogeny-Based Strain Prioritization for Drug Discovery: Streptomyces lunaelactis as a Case Study. Biomolecules, 10 (7). doi:10.3390/biom10071027

Tenconi, E., Traxler, M., Tellatin, D., van Wezel, G. P., & Rigali, S. (2020). Prodiginines Postpone the Onset of Sporulation in Streptomyces coelicolor. Antibiotics (Basel, Switzerland), 9 (12). doi:10.3390/antibiotics9120847

Martinet, L., Naomé, A., Deflandre, B., Maciejewska, M., Tellatin, D., Tenconi, E., Smargiasso, N., De Pauw, E., van Wezel, G. P., & Rigali, S. (2019). A Single Biosynthetic Gene Cluster Is Responsible for the Production of Bagremycin Antibiotics and Ferroverdin Iron Chelators. MBio, 10 (4). doi:10.1128/mBio.01230-19

Deflandre, B., Jourdan, S., Francis, I. M., Loria, R., & Rigali, S. (18 May 2018). Thaxtomin A: a promising alternative to synthetic herbicides [Poster presentation]. Bioforum 2018, Liège, Belgium.

Naomé, A., Maciejewska, M., Calusinska, M., Martinet, L., Anderssen, S., Adam, D., Tenconi, E., Deflandre, B., Coppieters, W., Karim, L., Hanikenne, M., Baurain, D., Delfosse, P., van Wezel, G., & Rigali, S. (May 2018). Complete Genome Sequence of Streptomyces lunaelactis MM109T, Isolated from Cave Moonmilk Deposits. Genome Announcements, 6 (21), 00435-18. doi:10.1128/genomeA.00435-18

Adam, D., Maciejewska, M., Naomé, A., Martinet, L., Coppieters, W., Karim, L., Baurain, D., & Rigali, S. (2018). Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits. Antibiotics, 7(2) (28), 10.3390/antibiotics7020028. doi:10.3390/antibiotics7020028

Jourdan, S.* , Francis, I.* , Deflandre, B., Tenconi, E., Riley, J., Planckaert, S., Tocquin, P., Martinet, L., Devreese, B., Loria, R.* , & Rigali, S.*. (2018). Contribution of the β-glucosidase BglC to the onset of the pathogenic lifestyle of Streptomyces scabies. Molecular Plant Pathology. doi:10.1111/mpp.12631
* These authors have contributed equally to this work.

Maciejewska, M., Całusińska, M., Cornet, L., Adam, D., Pessi, I. S., Malchair, S., Delfosse, P., Baurain, D., Barton, H., Carnol, M., & Rigali, S. (2018). High-throughput Sequencing Analysis of the Actinobacterial Spatial Diversity in Moonmilk Deposits. Antibiotics, 7(2) (28). doi:10.3390/antibiotics7020027

Tenconi, E., Traxler, M., Hoebreck, C., van Wezel, G., & Rigali, S. (2018). Production of prodiginines is part of a programmed cell death process in Streptomyces coelicolor. Frontiers in Microbiology. doi:10.3389/fmicb.2018.01742

Jourdan, S., Francis, J., Deflandre, B., Loria, R., & Rigali, S. (2017). Tracking the Subtle Mutations Driving Host Sensing by the Plant Pathogen Streptomyces scabies. mSphere. doi:10.1128/mSphere.00367-16

Maciejewska, M., Adam, D., Naomé, A., Martinet, L., Tenconi, E., Calusinska, M., Delfosse, P., Hanikenne, M., Baurain, D., Compère, P., Carnol, M., Barton, H., & Rigali, S. (2017). Assessment of the Potential Role of Streptomyces in Cave Moonmilk Formation. Frontiers in Microbiology, 8. doi:10.3389/fmicb.2017.01181

Tocquin, P., Naomé, A., Jourdan, S., Anderssen, S., Hiard, S., van Wezel, G., Hanikenne, M., Baurain, D., & Rigali, S. (2016). PREDetector 2.0: Online and Enhanced Version of the Prokaryotic Regulatory Elements Detector Tool. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/203998. doi:10.1101/084780

Maciejewska, M.* , Adam, D.* , Martinet, L., Naomé, A., Całusińska, M., Delfosse, P., Carnol, M., Barton, H., HAYETTE, M.-P., Smargiasso, N., De Pauw, E., Hanikenne, M., Baurain, D., & Rigali, S. (2016). A Phenotypic and Genotypic Analysis of the Antimicrobial Potential of Cultivable Streptomyces Isolated from Cave Moonmilk Deposits. Frontiers in Microbiology. doi:10.3389/fmicb.2016.01455
* These authors have contributed equally to this work.

Jourdan, S.* , Francis, I.* , Kim, M., Salazar, J., Planckaert, S., Frère, J.-M., Matagne, A., Kerff, F., Devreese, B., Loria, R., & Rigali, S. (2016). The CebE/MsiK Transporter is a Doorway to the Cello-oligosaccharide-mediated Induction of Streptomyces scabies Pathogenicity. Scientific Reports. doi:10.1038/srep27144
* These authors have contributed equally to this work.

Urem, M., van Rossum, T., Bucca, G., Moolenaar, G. F., Laing, E., Swiatek-Połatynska, M., Willemse, J., Tenconi, E., Rigali, S., Goosen, N., Smith, C., & van Wezel, G. P. (2016). OsdR of Streptomyces coelicolor and the Dormancy Regulator DevR of Mycobacterium tuberculosis Control Overlapping Regulons. mSystems. doi:10.1128/mSystems.00014-16

Arguelles Arias, A.* , Lambert, S.* , Martinet, L., Adam, D., Tenconi, E., HAYETTE, M.-P., Ongena, M., & Rigali, S. (2015). Growth of desferrioxamine deficient Streptomyces mutants through xenosiderophore piracy of airborne fungal contaminations. FEMS Microbiology Ecology. doi:10.1093/femsec/fiv080
* These authors have contributed equally to this work.

Francis, I.* , Jourdan, S.* , Fanara, S., Loria, R., & Rigali, S. (2015). The Cellobiose Sensor CebR is the Gatekeeper of Streptomyces scabies Pathogenicity. MBio. doi:10.1128/mBio.02018-14
* These authors have contributed equally to this work.

Liao, C.-H., Xu, Y., Rigali, S., & Ye, B.-C. (2015). DasR is a pleiotropic regulator required for antibiotic production, pigment biosynthesis, and morphological development in Saccharopolyspora erythrae. Applied Microbiology and Biotechnology. doi:10.1007/s00253-015-6892-7

Maciejewska, M., Stelmach Pessi, I., Arguelles Arias, A., Noirfalise, P., Luis, G., Ongena, M., Barton, H., Carnol, M., & Rigali, S. (2015). Streptomyces lunaelactis sp. nov., a Novel Ferroverdin A-Producing Streptomyces Species Isolated from a Moonmilk Speleothem. Antonie van Leeuwenhoek, 107, 519–531. doi:10.1007/s10482-014-0348-4

Rigali, S., Nivelle, R., & Tocquin, P. (2015). On the necessity and biological significance of threshold-free regulon prediction outputs. Molecular Biosystems, 11, 333-337. doi:10.1039/C4MB00485J

Świątek-Połatyńska, M., Bucca, G., Laing, E., Gubbens, J., Titgemeyer, F., Smith, C., Rigali, S., & van Wezel, G. (2015). Genome-Wide Analysis of In Vivo Binding of the Master Regulator DasR in Streptomyces coelicolor Identifies Novel Non-Canonical Targets. PLoS ONE. doi:10.1371/journal.pone.0122479

Tenconi, E., Urem, M., Świątek-Połatyńska, M., Titgemeyer, F., Muller, Y., van Wezel, G., & Rigali, S. (2015). Multiple allosteric effectors control the affinity of DasR for its target sites. Biochemical and Biophysical Research Communications. doi:10.1016/j.bbrc.2015.06.152

Jourdan, S., Francis, I., Loria, R., & Rigali, S. (October 2014). The cellobiose-sensor CebR is the gatekeeper of Streptomyces scabies pathogenicity [Poster presentation]. XVII. International Symposium on the Biology of Actinomycetes, Kusadasi, Turkey.

Lambert, S.* , Traxler, M. F.* , Craig, M., Maciejewska, M., Ongena, M., van Wezel, G. P., Kolter, R., & Rigali, S. (2014). Altered Desferrioxamine-mediated Iron Utilization is a Common Trait of bald Mutants of Streptomyces coelicolor. Metallomics. doi:10.1039/C4MT00068D
* These authors have contributed equally to this work.

Liao, C.* , Rigali, S.* , Licona-Cassani, C., Marcellin, E., Nielsen, L., & Ye, B.-C. (2014). Control of chitin and N-acetylglucosamine utilization in Saccharopolyspora erythraea. Microbiology. doi:10.1099/mic.0.078261-0
* These authors have contributed equally to this work.

Craig, M., Lambert, S., Tenconi, E., Jourdan, S., Maciejewska, M., Ongena, M., & Rigali, S. (October 2012). N-Acetylglucosamine-Mediated Inhibition of Siderophore Biosynthesis Counteracts the suicidal Tendencies of Streptomyces coelicolor [Poster presentation]. Actinobacteria within soils : Capacities for mutualism, symbiosis and pathogenesis, Germany.

Craig, M., Lambert, S., Jourdan, S., Tenconi, E., Colson, S., Maciejewska, M., Martin, J. F., Ongena, M., van Wezel, G. P., & Rigali, S. (2012). Unsuspected Control of Siderophore production by N-acetylglucosamine in Streptomycetes. Environmental Microbiology Reports. doi:10.1111/j.1758-2229.2012.00354.x

Dwarakanath, S., Chaplin, A., Hough, M., Rigali, S., Vijgenboom, E., & Worrall, J. (2012). The response to copper stress in Streptomyces lividans extends beyond genes under the direct control of a Copper sensitive operon Repressor protein (CsoR). Journal of Biological Chemistry. doi:10.1074/jbc.M112.352740

Swiatek, Tenconi, E., Rigali, S., & van Wezel, G. (2012). Functional Analysis of the N-Acetylglucosamine Metabolic Genes of Streptomyces coelicolor and Role in Control of Development and Antibiotic Production. Journal of Bacteriology, 194 (5), 1136-44. doi:10.1128/JB.06370-11

Tenconi, E., Jourdan, S., Motte, P., Virolle, M., & Rigali, S. (2012). Extracellular Sugar-Phosphates are Assimilated by Streptomyces in a PhoP-dependent Manner. Antonie van Leeuwenhoek. doi:10.1007/s10482-012-9763-6

Bertram, R.* , Rigali, S.* , Wood, N., Lulko, A. T., Kuipers, O. P., & Titgemeyer, F. (2011). Regulon of the N-acetylglucosamine utilization regulator NagR in Bacillus subtilis. Journal of Bacteriology, 193 (14), 3525-36. doi:10.1128/JB.00264-11
* These authors have contributed equally to this work.

Girard, G., & Rigali, S. (2011). Role of the phenazine-inducing protein Pip in stress resistance of Pseudomonas chlororaphis. Microbiology, 157 (2), 398-407. doi:10.1099/mic.0.043075-0

Nothaft, H., Rigali, S., Boomsma, B., Swiatek, M., McDowall, K. J., van Wezel, G. P., & Titgemeyer, F. (2010). The permease gene nagE2 is the key to N-acetylglucosamine sensing and utilization in Streptomyces coelicolor and is subject to multi-level control. Molecular Microbiology, 75 ((5)), 1133-44. doi:10.1111/j.1365-2958.2009.07020.x

Hoskisson, P., & Rigali, S. (2009). Chapter 1 Variation in Form and Function The Helix-Turn-Helix Regulators of the GntR Superfamily. Advances in Applied Microbiology, Chapitre 1. doi:10.1016/S0065-2164(09)69001-8

Colson, S., van Wezel, G. P., Craig, M., Noens, E. E., Nothaft, H., Mommaas, A. M., Titgemeyer, F., Joris, B., & Rigali, S. (February 2008). The Chitobiose-Binding Protein, DasA, Acts as a Link between Chitin Utilization and Morphogenesis in Streptomyces Coelicolor. Microbiology, 154 (Pt 2), 373-82. doi:10.1099/mic.0.2007/011940-0

Rigali, S., Titgemeyer, F., Barends, S., Mulder, S., Thomae, A., Hopwood, D., & van Wezel, G. (2008). Feast or famine: the global regulator DasR links nutrient stress to antibiotic production by Streptomyces. EMBO Reports, 9 (7), 670-675. doi:10.1038/embor.2008.83

Hiard, S., Rigali, S., Colson, S., Marée, R., & Wehenkel, L. (12 November 2007). PREDetector : Prokaryotic Regulatory Element Detector [Poster presentation]. Benelux Bioinformatics Conference 2007, Leuven, Belgium.

Hiard, S., Marée, R., Colson, S., Hoskisson, P. A., Titgemeyer, F., van Wezel, G. P., Joris, B., Wehenkel, L., & Rigali, S. (June 2007). PREDetector: A new tool to identify regulatory elements in bacterial genomes. Biochemical and Biophysical Research Communications, 357 (4), 861-864. doi:10.1016/j.bbrc.2007.03.180

Hiard, S., Rigali, S., Colson, S., Marée, R., & Wehenkel, L. (15 February 2007). PREDetector : Prokaryotic Regulatory Element Detector [Poster presentation]. Bioinformatics and Modeling : From genomes to network, Liège, Belgium.

Colson, S., Stephan, J., Hertrich, T., Saito, A., van Wezel, G. P., Titgemeyer, F., & Rigali, S. (2007). Conserved cis-acting elements upstream of genes composing the chitinolytic system of streptomycetes are DasR-responsive elements. Journal of Molecular Microbiology and Biotechnology, 12 (1-2), 60-66. doi:10.1159/000096460

Rigali, S., Nothaft, H., Noens, E. E. E., Schlicht, M., Colson, S., Müller, M., Joris, B., Koerten, H. K., Hopwood, D. A., Titgemeyer, F., & van Wezel, G. P. (September 2006). The sugar phosphotransferase system of Streptomyces coelicolor is regulated by the GntR-family regulator DasR and links N-acetylglucosamine metabolism to the control of development. Molecular Microbiology, 61 (5), 1237-1251. doi:10.1111/j.1365-2958.2006.05319.x

Hoskisson, P. A., Rigali, S., Fowler, K., Findlay, K. C., & Buttner, M. J. (July 2006). DevA, a GntR-like transcriptional regulator required for development in Streptomyces coelicolor. Journal of Bacteriology, 188 (14), 5014-5023. doi:10.1128/JB.00307-06

Hiard, S., Rigali, S., Colson, S., Marée, R., & Wehenkel, L. (17 May 2006). PreDetector : Prokaryotic Regulatory Element Detector [Poster presentation]. 10th Bioforum, Liège, Belgium.

Girard, G., Barends, S., Rigali, S., van Rij, E. T., Lugtenberg, B. J., & Bloemberg, G. V. (2006). Pip, a novel activator of phenazine biosynthesis in Pseudomonas chlororaphis PCL1391. Journal of Bacteriology, 188 (23), 8283-8293. doi:10.1128/JB.00893-06

De Lemos Esteves, F., Gouders, T., Lamotte-Brasseur, J., Rigali, S., & Frère, J.-M. (February 2005). Improving the alkalophilic performances of the Xyl1 xylanase from Streptomyces sp S38: Structural comparison and mutational analysis. Protein Science: A Publication of the Protein Society, 14 (2), 292-302. doi:10.1110/ps.04978705

Derouaux, A., Dehareng, D., Lecocq, E., Halici, S., Nothaft, H., Giannotta, F., Moutzourelis, G., Dusart, J., Devreese, B., Titgemeyer, F., Van Beeumen, J., & Rigali, S. (17 December 2004). Crp of Streptomyces Coelicolor Is the Third Transcription Factor of the Large Crp-Fnr Superfamily Able to Bind Camp. Biochemical and Biophysical Research Communications, 325 (3), 983-90. doi:10.1016/j.bbrc.2004.10.143

Rigali, S., Schlicht, M., Hoskisson, P., Nothaft, H., Merzbacher, M., Joris, B., & Titgemeyer, F. (June 2004). Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships. Nucleic Acids Research, 32 (11), 3418-3426. doi:10.1093/nar/gkh673

Derouaux, A., Halici, S., Nothaft, H., Neutelings, T., Moutzourelis, G., Dusart, J., Titgemeyer, F., & Rigali, S. (May 2004). Erratum to : Deletion of a cyclic AMP receptor protein homologue diminishes germination and affects morphological development of Streptomyces coelicolor (vol 186, pg 1897, 2004). Journal of Bacteriology, 186 (10), 3282-3282. doi:10.1128/JB.186.10.3282.2004

Derouaux, A., Halici, S., Nothaft, H., Neutelings, T., Moutzourelis, G., Dusart, J., Titgemeyer, F., & Rigali, S. (March 2004). Deletion of a cyclic AMP receptor protein homologue diminishes germination and affects morphological development of Streptomyces coelicolor. Journal of Bacteriology, 186 (6), 1893-1897. doi:10.1128/JB.186.6.1893-1897.2004

Giannotta, F., Georis, J., Rigali, S., Virolle, M. J., & Dusart, J. (December 2003). Site-directed mutagenesis of conserved inverted repeat sequences in the xylanase C promoter region from Streptomyces sp EC3. Molecular Genetics and Genomics, 270 (4), 337-346. doi:10.1007/s00438-003-0927-y

Lee, M. H., Scherer, K., Rigali, S., & Golden, J. W. (2003). PlmA, a new member of the GntR family, has plasmid maintenance functions in Anabaena sp. strain PCC 7120. Journal of Bacteriology, 185 (15), 4315-4325. doi:10.1128/JB.185.15.4315-4325.2003

Rigali, S., Derouaux, A., Giannotta, F., & Dusart, J. (12 April 2002). Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. Journal of Biological Chemistry, 277 (15), 12507-12515. doi:10.1074/jbc.M110968200