Publications and communications of Johan Michaux

Van Leeuwen, P., & Michaux, J. (December 2023). Using eDNA for mammal inventories still needs naturalist expertise, a meta-analysis. Ecology and Evolution, 13 (12), 10788. doi:10.1002/ece3.10788

Talenti, A., Wilkinson, T., Cook, E. A., Hemmink, J. D., Paxton, E., Mutinda, M., Ngulu, S. D., Jayaraman, S., Bishop, R. P., Obara, I., Hourlier, T., Giron, C. G., Martin, F. J., Labuschagne, M., Atimnedi, P., Nanteza, A., Keyyu, J. D., Mramba, F., Caron, A., ... Morrison, L. J. (2023). Continent-wide genomic analysis of the African buffalo (<i>Syncerus caffer</i>). ORBi-University of Liège. https://orbi.uliege.be/handle/2268/312040. doi:10.1101/2023.11.12.566748

Beez, T., Leyhausen, J., Mueller, S., von Thaden, A., Bertolino, S., Büchner, S., Fietz, J., Lang, J., Michaux, J., Verbeylen, G., Nowak, C., & Cocchiararo, B. (2023). Development of a microfluidic SNP assay for lineage discrimination in the endangered hazel dormouse. ORBi-University of Liège. https://orbi.uliege.be/handle/2268/312031. doi:10.21203/rs.3.rs-3024782/v1

Esson, C., Samelius, G., Strand, T. M., Lundkvist, Å., Michaux, J., Råsbäck, T., Wahab, T., Mijiddorj, T. N., Berger, L., Skerratt, L. F., & Low, M. (2023). The prevalence of rodent-borne zoonotic pathogens in the South Gobi desert region of Mongolia. Infection Ecology and Epidemiology, 13 (1), 2270258. doi:10.1080/20008686.2023.2270258

Gailly, D., Mouton alice, Denys Hélène, Bourgarel Mathieu, Capelle Julien, Caron Alexandre, Pouliquen Thibault, Leendertz Fabian, Lalis AUde, Nicolas Violaine, Hulva Pavel, & Michaux, J. (2023). Population genetics of African Fruit Bats involved in ecology of Filoviridae (Ebola virus, Marburg virus) in West, Central and Southern Africa. Virologie, 27.

Michaux, J. (2023). Taxonomic Status of the African Buffalo. In Ecology and Management of the African Buffalo. Cambridge, United Kingdom: Cambridge University Press.

Van Leeuwen, P., Schulte-Hostedde, A. I., Fournier-Chambrillon, C., Fournier, P., Pigneur, L.-M., Aranda, C. M., Urra-Maya, F., & Michaux, J. (2023). A Microbial Tale of Farming, Invasion and Conservation: On the Gut Bacteria of European and American Mink in Western Europe. Biological Invasions. doi:10.21203/rs.3.rs-912230/v1

Visser, F., Drouilly, M., Moodley, M., Michaux, J., & Somers, M. (2023). Mismatch between conservation needs and actual representation of lions from West and Central Africa in in situ and ex situ conservation. Conservation Letters, 16;e12949. doi:10.1111/conl.12949

Houngbegnon, F., Gillet, J.-F., Michaux, J., Brostaux, Y., Zebaze Dongmo, D., Lhoest, S., Vermeulen, C., Sonké, B., & Doucet, J.-L. (24 November 2022). Seed dispersal by duikers in selectively logged rainforests: Overlooked dispersal of an important animal community. Forest Ecology and Management, 529, 120650. doi:10.1016/j.foreco.2022.120650

Jean Métis, N. M., ZebeVictorine, M., Michaux, J., & Jean-Claude, M. (October 2022). Sustainable exploitation and participative conservation of Mormyridae fishes in the Malebo Pool, Congo River, Kinshasa. African Journal of Biological Sciences, 4 (4), 77 - 91. doi:10.33472/AFJBS.4.4.2022.77-91

Etherington, G. J., Ciezarek, A., Shaw, R., Michaux, J., Croose, E., Haerty, W., & Di Palma, F. (2022). Extensive genome introgression between domestic ferret and European polecat during population recovery in Great Britain. Journal of Heredity. doi:10.1093/jhered/esac038

Ntumba Mabedi, J. M., Mbadu Zebe, V., Michaux, J., & Micha, J.-C. (08 July 2022). Biologie de la reproduction des Marcusenius (M. monteiri, M. stanleyanus, M. schilthuisiae et M. macrolepidotus) du Pool Malebo, fleuve Congo, Kinshasa. International Journal of Biological and Chemical Sciences, 16 (2), 564 - 580. doi:10.4314/ijbcs.v16i2.5

Leyhausen, J., Cocchiararo, B., Nowak, C., Ansorge, H., Bertolino, S., Büchner, S., Fietz, J., Foppen, R., Juškaitis, R., La Haye, M., Lang, J., Michaux, J., Verbeylen, G., von Thaden, A., & Mueller, S. A. (June 2022). Genotyping-by-sequencing based SNP discovery in a non-model rodent, the endangered hazel dormouse. Conservation Genetics Resources, 14 (2), 195 - 201. doi:10.1007/s12686-022-01253-8

chevret, P., renaud, S., quere, J. P., & Michaux, J. (2022). Structure génétique et morphométrie crânienne dans le genre Arvicola. Arvicola.

Van Leeuwen, P., Schulte-Hostedde, A. I., Fournier-Chambrillon, C., Aranda, C. M., Berthomieu, L., Fournier, P., & Michaux, J. (2021). Conservation Genetics and Gut Microbial Communities’ Variability of the Critically Endangered European Mink Mustela Lutreola: Implications for Captive Breeding Programs. Research Square. doi:10.21203/rs.3.rs-932275/v1

Andre, A., Michaux, J., Gaitan, J., & Millien, V. (2021). Long-term stress level in a small mammal species undergoing range expansion. Mammalia. doi:10.1515/mammalia-2020-0041

Andriollo, T., Michaux, J., & Ruedi, M. (2021). Food for everyone: Differential feeding habits of cryptic bat species inferred from DNA metabarcoding. Molecular Ecology, 30 (18), 4584-4600. doi:10.1111/mec.16073

Latinne, A., Chen, H. W., Kuo, C. C., Singleton, G., Stuart, A., Malbas, A., Demanche, C., Chabe, M., Michaux, J., & Morand, S. (2021). Revisiting the Pneumocystis host specificity paradigm and transmission ecology in wild Southeast Asian rodents. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases. doi:10.1016/j.meegid.2021.104978

LIM, M., BLANC, F., Michaux, J., pigneur, L. M., gillet, F., marc, D., poncet, E., & nemoz, E. (2021). Étude comparative de la densité et du déplacement des Desmans des Pyrénées Galemys pyrenaicus (É. Geoffroy Saint-Hilaire, 1811) par une méthode non invasive. Naturae.

Michaux, J., Dyck, M., Loughed, S., & Van coeverden de Groot, P. (2021). New insights on polar bear (Ursus maritimus) diet from faeces based on Next Generation Sequencing technologies. Arctic, 74 (1), 87-99. doi:10.14430/arctic72239

Skorupski, J., Michaux, J., & Śmietana, P. (2021). A meta-analytical investigation of the gap between measured and predicted inter-population genetic diversity in species of high conservation concern - the case of the critically endangered European mink Mustela lutreola L., 1761. Genes, 12(10). doi:10.3390/genes12101555

Subrata, S., Siregar, S., André, A., & Michaux, J. (2021). Identifying prey of the Javan mongoose (Urva javanica) in Java from fecal samples using next‑generation sequencing. Mammalian Biology. doi:10.1007/s42991-020-00086-y

Szewczyk, M., Nowak, C., Hulva, P., Mergeay, J., Stronen, A., Bolfíková, B., Czarnomska, S., Diserens, T., Fenchuk, V., Figura, M., de Groot, A., Haidt,, A., Hansen, M., Jansman, H., Kluth, G., Kwiatkowska, I., Lubińska, K., Michaux, J., Niedźwiecka, N., ... Mysłajek, R. (2021). Genetic support for the current discrete conservation unit of the Central European wolf population. Wildlife Biology. doi:10.2981/wlb.00809

Welter, D., Ruaud, A., Henzeler, Z., De jong, H., Van Coeverden de Groot, P., Michaux, J., Gormezano, L., Waters, J., Youngblut, L., & Ley, R. (2021). Free-living, psychrotrophic bacteria of the genus Psychrobacter are descendents of pathobionts. mSystems. doi:10.1128/mSystems.00258-21

chevret, P., Renaud, S., Helvaci, Z., Ulrich, R., Quere, J. P., & Michaux, J. (2020). Genetic structure, ecological versatility, and skull shape differentiation in Arvicola water voles (Rodentia, Cricetidae). Journal of Zoological Systematics and Evolutionary Research, 1. doi:10.1111/jzs.12384

Latinne, A., Navascués, M., Pavlenko, M., Kartavtseva, I., Ulrich, R., Tiouchichine, M.-L., Catteau, G., Sakka, H., Quéré, J. P., Chelomina, G., Bogdanov, A., Stanko, M., Hang, L., Neumann, K., Henttonen, H., & Michaux, J. (2020). Phylogeography of the striped field mouse, Apodemus agrarius (Rodentia: Muridae), throughout its distribution range in the Palaearctic region. Mammalian Biology. doi:10.1007/s42991-019-00001-0

Andriollo, T., Gillet, F., Michaux, J., & Ruedi, M. (2019). The menu varies with metabarcoding practices: a case study with the bat Plecotus auritus. PLoS ONE. doi:10.1371/journal.pone.0219135

Bourgarel, M., Noel, V., Pfukenyi, D., Becquart, P., Cerqueira, F., Barrachina, C., Boue, V., Talignani, L., Matope, G., Misse, D., Morand, S., Liegeois, F., Michaux, J., & Andre, A. (2019). Next-Generation Sequencing on Insectivorous Bat Guano: An Accurate Tool to Identify Arthropod Viruses of Potential Agricultural Concern. Viruses, 11, 2014. doi:10.3390/v11121102

Esson, C., Skerratt, L. F., Berger, L., Malmsten, J., Strand, T., Lundkvist, A., Jarhult, J. D., Michaux, J., Mijiddorj, T., Bayrakçısmith, R., Mishra, C., & Johansson, O. (2019). Health and zoonotic Infections of snow leopards Panthera unica in the South Gobi desert of Mongolia. Infection Ecology and Epidemiology, 9, 1604063. doi:10.1080/20008686.2019.1604063

Michaux, J., Hurner, H., Krystufek, B., Sara, M., Ribas, A., Ruch, T., Vekhnik, V., & Renaud, S. (2019). Consequence of past anthropogenic forest fragmentation on the genetic structure of European mammals: the example of the edible dormouse (Glis glis). Biological Journal of the Linnean Society, 126 (4), 836-851.

Pigneur, L. M., Caublot, G., Fournier-Chambrillon, C., Fournier, P., Girralda-Carrera, G., Grémillet, X., Le Roux, B., Marc, D., Simonnet, F., Smitz, N., Sourp, E., Steinmetz, J., Urra-Maya, F., & Michaux, J. (2019). Current genetic admixture between relictual populations might enhance the recovery of an elusive carnivore, the European otter (Lutra lutra). Conservation Genetics, https://doi.org/10.1007/s10592-019-01199-9. doi:10.1007/s10592-019-01199-9

Andre, A., Mouton, A., Millien, V., & Michaux, J. (2018). Pathobiome of the Lyme disease principal reservoir in southern Quebec (Peromyscus leucopus) [Paper presentation]. Pathobiome 2018, Ajaccio, France.

chevret, P., helvaci, Z., quere, J. P., renaud, S., & Michaux, J. (2018). Aquatic and terrestrial water voles: phylogeography and morphometrics [Poster presentation]. Congrès rodens & spatium, Potdsam, Germany.

chevret, P., Helzaci, Z., Quere, J. P., Renaud, S., & Michaux, J. (2018). Aquatic and terrestrial water voles: phylogeography and morphometrics [Paper presentation]. 40 ième colloque de la société française d'étude et de protection des mammifères (SFEPM), Caen, France.

Fournier-Chambrillon, C., Torres, M., André, A., & Michaux, J. (2018). Severe parasitism by Versteria mustelae (Gmelin, 1790) in the critically endangered European mink Mustela lutreola (Linnaeus, 1761) in Spain. Parasitology Research, 117 (10). doi:10.1007/s00436-018-6043-z

Gailly, D., & Michaux, J. (2018). Population genetics and phylogeography of African Fruit Bats involved in ecology of Filoviridae (Ebola virus, Marburg virus) in West, Central and Southern Africa [Paper presentation]. Young Researchers Day 2018, Bruxelles, Belgium.

Ledevin, R., Chevret, P., Helvaci, Z., Michaux, J., & Renaud, S. (2018). Bank Voles in Southern Eurasia: Vicariance and Adaptation. Journal of Mammalian Evolution, 25 (1), 119-129. doi:10.1007/s10914-016-9368-3

Michaux, J. (2018). Why some species disappear and other expand? The example of the minks (M. lutreola and N. vison) and the European otter (Lutra lutra [Paper presentation]. Conservation Genetics congress, Vienne, Austria.

Michaux, J. (2018). The revolution of new genetic tools for the study of the ecology of rare or elusive species, using non-invasive approaches [Paper presentation]. Frontiers and Horizons in Ecology congress, Belfast, United Kingdom.

Michaux, J., & Schenbrodt, G. (2018). Dipodidae family, In : Handbook of the Mammals of the World, Volume 7: Rodents II. In D. E. Wilson, T. E. Lacher, ... R. A. Mittermeier, Handbook of the Mammals of the World (pp. 1-30). Lynx.

Pigneur, L. M., Michaux, J., Caublot, G., Fournier, P., Marc, D., Simmonet, F., & Jacob, G. (2018). Apport de la génétique pour l’étude de la dynamique des populations de Loutre d’Europe Lutra lutra (Linnaeus, 1758) en France. Naturae, 6, 63-70.

Smitz, N., Jouvenet, O., Ambwene Ligate, F., Crosmary, W., Ikanda, D., Chardonnet, P., Fusari, F., Meganck, K., Gillet, F., Melleti, M., & Michaux, J. (2018). A genome-wide data assessment of the African lion (Panthera leo) population genetic structure and diversity in Tanzania. PLoS ONE, 13 (11). doi:10.1371/journal.pone.0205395

Young, G., Yap, M., Michaux, J., Steppan, S., & Stoye, J. (2018). Evolutionary journey of the retroviral restriction gene Fv1. Proceedings of the National Academy of Sciences of the United States of America, 115 (40), 10130-10135. doi:10.1073/pnas.1808516115

André, A., millien, V., Galan, M., ribas, A., & Michaux, J. (2017). Effects of parasite and historic driven selection on the diversity and structure of a MHC-II gene in a small mammal species (Peromyscus leucopus) undergoing range expansion. Evolutionary Ecology. doi:10.1007/s10682-017-9898-z

Biffi, M., Gillet, F., Lafaille, P., Aulagnier, S., Blanc, F., Colas, F., Galan, M., Némoz, M., Tiouchichine, M. L., Buisson, L., & Michaux, J. (2017). Novel insights into the diet of the Pyrenean desman Galemys pyrenaicus using next-generation sequencing molecular analyses. Journal of Mammalogy, 87, 176-184. doi:10.1093/jmammal/gyx070

Biffi, M., Laffaille, P., Jabiol, J., André, A., Gillet, F., Lamothe, S., Michaux, J., & Buisson, L. (2017). Comparison of diet and prey selectivity of the Pyrenean desman and the Eurasian water shrew using next-generation sequencing methods. Mammalian Biology, 87, 176-184. doi:10.1016/j.mambio.2017.09.001

Esson, C., Michaux, J., Johansson, Ö., Malmsten, J., Lkhagvajav, P., & Samelius, G. (2017). The importance of genetic tools when studying the distribution of rare and elusive species illustrated by the Kam dwarf hamster. Global Ecology and Conservation, 12, 166-169. doi:10.1016/j.gecco.2017.11.003

Gillet, F., Cabria, M., Blanc, F., Fournier-Chambrillon, C., Nemoz, M., Sourp, E., Vial-Novella, C., Zardoya, R., Aulagnier, S., & Michaux, J. (2017). Evidence of a fine-scale genetic structure for the endangered Pyrenean desman (Galemys pyrenaicus) in the French Pyrenees. Journal of Mammalogy. doi:10.1093/jmammal/gyx002

Michaux, J. (2017). The revolution of new genetic tools for the study of the ecology of rare or elusive species, using non-invasive approaches [Paper presentation]. The 9th International zoological congress of Grigore Antipa Museum, Bucarest, Romania.

Michaux, J. (2017). Expand or disappear ? Why related Mustelid species follow different roads. Lessons from the genetic study of minks, polecat and otter [Paper presentation]. European Mustelid Colloquium, Lyon, France.

Michaux, J. (2017). An overview of genetic tools to study biodiversity and health, from the hosts to the vectors and their pathogens [Paper presentation]. Wildlife-livestock-human health in Indonesia: identifying priorities for research and higher education partnerships, Yogyakarta, Indonesia.

Neumann, K., Yiğit, N., Fritzsche, P., Çolak, E., Feoktistova, N., Surov, A., & Michaux, J. (2017). Genetic structure of the Turkish hamster (Mesocricetus brandti). Mammalian Biology, 86, 84-91. doi:10.1016/j.mambio.2017.06.004

Pigneur, L. M., Gillet, F., André, A., & Michaux, J. (2017). How can genetic tools contribute to the study and management of wild fauna? [Paper presentation]. Journées faunes, organisée par la faculté Agrobiotch, ULg, Gembloux, Belgium.

Oromi Farrús, N., Michaux, J., & Denoël, M. (05 October 2016). Facultative paedomorphosis in the palmate newt (Lissotriton helveticus) and the coexistence of two alternative phenotypes [Paper presentation]. XIV Congreso Luso-Español de Herpetologia, Lleida, Spain.

Oromi Farrús, N., Michaux, J., & Denoël, M. (August 2016). High gene flow between alternative morphs and the evolutionary persistence of facultative paedomorphosis. Scientific Reports, 6, 32046. doi:10.1038/srep32046

Alfano, N., Michaux, J., Fabre, P.-H., Morand, S., Aplin, K., Tsangaras, K., Lober, U., Fitriana, Y., Semiadi, G., Ishida, Y., Helgen, K., Roca, A., Eiden, M., & Greenwood, A. (2016). An endogenous gibbon ape leukemia virus (GALV) identified in a rodent (Melomys sp.) from Indonesia. Journal of Virology.

Andre, A., Mouton, A., Millien, V., & Michaux, J. (2016). Study of the microbiome from the lyme disease principal reservoir in southern Quebec (Peromyscus leucopus) [Poster presentation]. Pathobiome 2015: Pathogens in microbiotas in hosts, Paris, France.

Colak, E., Karacan, G., Kandemir, I., Colak, E., Kankilic, T., Yigit, N., & Michaux, J. (2016). Genetic variations of Turkish bank vole, Myodes glareolus (Mammalia: Rodentia) inferred from mtDNA. Mitochondrial DNA: the Journal of DNA Mapping, Sequencing, and Analysis. doi:10.3109/19401736.2015.1089537

Herman, J., Johannesdottir, F., Jones, E., McDevitt, A., Michaux, J., White, T., Wojcik, J., & Searle, J. (2016). Post-glacial colonization of Europe by the wood mouse, Apodemus sylvaticus: evidence of a northern refugium and dispersal with humans. Biological Journal of the Linnean Society. doi:10.1111/bij.12882

Michaux, J., & Smitz, N. (2016). EEffect of habitat fragmentation on the genetic structure of southern African populations of African buffalo (Syncerus caffer) [Poster presentation]. 9th International Wildlife Ranching Symposium, Skukuza, South Africa.

Mouton, A., Espelta, J. M., Baurain, D., & Michaux, J. (2016). Using Next Generation Sequencing to characterize species diets: a study case with faeces of wild boar in the Spanish Pyrenees [Poster presentation]. Congenomics conference, Porto, Portugal.

Mouton, A., Grill, A., Mortelliti, A., Sara, M., Krystufek, B., Buchner, S., Lang, J., Adamik, P., Randi, E., Amori, G., Elmeros, M., Verbeylen, G., Dorenbosch, M., Schulz, B., Aloise, G., Matur, F., & Michaux, J. (2016). New insight in the evolutionary history of the common dormouse, Muscardinus avellanarius: a new cryptic species? Conservation Genetics.

Niccolo, A., Michaux, J., Fabre, P.-H., Morand, S., Aplin, K., Kyriakos, T., Lober, U., Fitriana, Y., Gono, S., Yasuko, I., Helgen, K., Roca, A., Eiden, M., & Greenwood, A. (2016). An endogenous gibbon ape leukemia virus (GALV) identified in a rodent (Melomys sp.) from Indonesia. Journal of Virology, sous presse.

Ovidio, M., Hanzen, C., Gennotte, V., Michaux, J., Benitez, J.-P., & Dierckx, A. (2016). Is adult translocation a credible way to accelerate the recolonization process of Chondrostoma nasus in a rehabilitated river? Cybium, 40 (1), 43-49.

Pigneur, L. M., & Michaux, J. (2016). Unravelling population structure and recent colonization history of an elusive carnivore, the Eurasian otter (Lutra lutra) in western France using microsatellites and Single-Nucleotide-Polymorphism (SNP) markers [Poster presentation]. Zoology Congress 2016, Anvers, Belgium.

Pigneur, L. M., & Michaux, J. (2016). Etude des processus de recolonisation de la loutre européenne (Lutra lutra) en France à partir de marqueurs génétiques microsatellites [Paper presentation]. Colloque restituation plan national action loutre, ministère environnement, Limoge, France.

Smitz, N., & Michaux, J. (2016). Population genomics of the Cape buffalo subspecies (Syncerus caffer caffer) of the Southern African region based on SNP markers [Paper presentation]. 2nd IUCN African Buffalo Symposium, Windhoek, Namibia.

Smitz, N., & Michaux, J. (2016). Genetic structure of the African Buffalo, based on SNP markers [Paper presentation]. Conservation Congenomics 2016.

smitz, N., Van Hooft, P., Heller, R., Cornelis, D., Chardonnet, P., Kraus, R., Greyling, B., Crooijmans, R., Groenen, M., & Michaux, J. (2016). Genome-wide single nucleotide polymorphism (SNP) identification and characterization in a non-model organism, the African buffalo (Syncerus caffer), using next generation sequencing. Mammalian Biology, 81, 595-603. doi:10.1016/j.mambio.2016.07.047

Oromi Farrús, N., Michaux, J., & Denoël, M. (09 October 2015). Study of the coexistence pattern of two alternative phenotypes in the palmate newt (Lissotriton helveticus), the answer from microsatellite markers [Paper presentation]. Zoology 2015 (22nd Benelux Congress of Zoology), Amsterdam, Netherlands.

Gennotte, V., Prignon, C., Dierckx, A., Benitez, J.-P., Ovidio, M., Michaux, J., Flamand, M.-C., & Mélard, C. (2015). Etude de la diversité génétique et de l’état des stocks des populations de barbeaux et de hotus en Wallonie. Amélioration des techniques d’élevage en vue de repeuplements raisonnés et de transferts de connaissances vers les pisciculteurs. (FEP 32-1109-005). ULg - Université de Liège.

Gillet, F., Cabria Garrido, M. T., Blanc, F., Némoz, M., Fournier-Chambrillon, C., Sourp, E., Vial-Novella, C., Zardoya, R., Aulagnier, S., & Michaux, J. (05 August 2015). Evidence of a fine-scale genetic structure for the endangered Pyrenean desman (Galemys pyrenaicus) in the French Pyrenees [Poster presentation]. 27th International Congress for Conservation Biology 4th European Congress for Conservation Biology, Montpellier, France.

Andre, A., Mouton, A., Millien, V., & Michaux, J. (July 2015). Study of the microbiome from the lyme disease principal reservoir in southern Quebec (Peromyscus leucopus) [Paper presentation]. Pathobiome conference.

Renaud, S., Quere, J. P., & Michaux, J. (2015). Biogeographic variations in wood mice: Testing for the role of morphological variation as a line of least resistance to evolution. In P. Cox & L. Hautier (Eds.), Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology ‘Evolution of the Rodents: Advances in Phylogeny, Paleontology and Functional Morphology’. United States: Cambridge University Press. doi:10.1017/CBO9781107360150.012

André, A., Mouton, A., Millien, V., & Michaux, J. (25 June 2015). The microbiome from the Lyme disease principal reservoir host in southern Quebec (Peromyscus leucopus) [Poster presentation]. Pathobiome.

Morand, S., Bordes, F., Chen, H.-W., Claude, J., Cosson, J.-F., Galan, M., Czirják, G. Á., Greenwood, A. D., Latinne, A., Michaux, J., & Ribas, A. (2015). Global parasite and Rattus rodent invasions: The consequences for rodent-borne diseases. Integrative Zoology. doi:10.1111/1749-4877.12143

Pisano, J., Condamine, F. L., Lebedev, V., Bannikova, A., Quéré, J.-P., Shenbrot, G. I., Pagès, M., & Michaux, J. (May 2015). Out of Himalaya: the impact of past Asian environmental changes on the evolutionary and biogeographical history of Dipodoidea (Rodentia). Journal of Biogeography, 42 (5), 856-870. doi:10.1111/jbi.12476

Latinne, A., Meynard, C., Herbreteau, V., Waengsothorn, S., Morand, S., & Michaux, J. (27 April 2015). Influence of past and future climate changes on the distribution of three Southeast Asian murine rodents. Journal of Biogeography, 42 (9), 1714-1726. doi:10.1111/jbi.12528

Blasdell, K., Bordes, F., Chaisiri, K., Chaval, Y., Claude, J., Cosson, J.-F., Latinne, A., Michaux, J., Morand, S., Pagès, M., & Tran, A. (30 March 2015). Progress on research on rodents and rodent-borne zoonoses in Southeast Asia. Wildlife Research, 42 (2), 98-107. doi:10.1071/WR14201

Ovidio, M., Hanzen, C., Gennotte, V., Michaux, J., Benitez, J.-P., & Dierckx, A. (March 2015). Evaluation d’un test de translocation intra-rivière de hotu (Chondrostoma nasus) par biotélémétrie et caractérisation génétique individuelle [Paper presentation]. Sixièmes rencontres de l'ichtyologie en France, Paris, France.

Cabria, M., Gonzalez, E., Gomez-Moliner, B., Michaux, J., Skumatov, D., Kranz, A., Fournier, P., Palazon, S., & Zardoya, R. (2015). Patterns of genetic variation in the endangered European mink (Mustela lutreola L., 1761). BMC Evolutionary Biology, 15, 141. doi:10.1186/s12862-015-0427-9

Charbonnel, A., Buisson, L., Biffi, M., D'Amico, F., Besnard, A., Aulagnier, S., Blanc, F., Gillet, F., Lacaze, V., Michaux, J., Nemoz, M., Page, C., Sanchez-Perez, J.-M., Sauvage, S., & Lafaille, P. (2015). Integrating hydrological features and 1 genetically validated occurrence data in occupancy 2 modeling of an endemic and endangered semi‐aquatic mammal species, Galemys pyrenaicus. 3 4. Biological Conservation.

Demanche, C., Deville, M., Michaux, J., Barriel, V., Pinçon, C., Aliouat-Denis, C.-M., Pottier, M., Noël, C., Viscoglios, E., Aliouat, E. M., Dei-Cas, E., Morand, S., & Guillot, J. (2015). What do Pneumocystis organisms tell us about the phylogeography of their hosts? The case of the woodmouse Apodemus sylvaticus in continental Europe and western Mediterranean islands. PLoS ONE, DOI:10.1371. doi:10.1371/journal.pone.0120839

Gillet, F., Tiouchichine, M.-L., Galan, M., Blanc, F., Némoz, M., Aulagnier, S., & Michaux, J. (2015). A new method to identify the endangered Pyrenean desman (Galemys pyrenaicus) and to study its diet, using next generation sequencing from faeces. Mammalian Biology, 80, 505-509. doi:10.1016/j.mambio.2015.08.002

Goffard, A., Demanche, C., Arthur, L., Pinçon, C., Michaux, J., & Dubuisson, J. (2015). Alphacoronaviruses Detected in French Bats Are Phylogeographically Linked to Coronaviruses of European Bats. Viruses, 7, 6279–6290. doi:10.3390/v7122937

Hartmann, S., Hasenkamp, N., Mayer, J., Michaux, J., Morand, S., Mazzoni, C., Roca, A. L., & Greenwood, A. (2015). Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse. BMC Genomics, DOI 10.1186/s12864-015-1766-z. doi:10.1186/s12864-015-1766-z

Lalis, A., Leblois, R., Liefrid, S., Ouarour, A., Reddy, B., Michaux, J., Hamani, A., denys, C., & Nicolas, V. (2015). New molecular data favour an anthropogenic introduction of the wood mouse (Apodemus sylvaticus) in North Africa. Journal of Zoological Systematics and Evolutionary Research, 54. doi:10.1111/jzs.12111

Michaux, J. (2015). “Why some species disappear and other expand? The example of the minks and the European otter ” [Paper presentation]. International Zoological Congress of “Grigore Antipa” Museum, Bucarest, Romania.

Michaux, J. (2015). Interest of genetic barcoding approaches for the study of biodiversity and epidemiology [Paper presentation]. Workshop on “Wildlife, parasites and pathogens: from barcoding to disease ecology, Bangkok, Thailand.

Michaux, J. (2015). Génétique de la conservation, de nouveaux outils et espoirs pour les espèces menacées ? [Paper presentation]. symposium biodiversité.

Pages, M., Fabre, P.-H., Chaval, Y., Mortelliti, A., Nicolas, V., Wells, K., Michaux, J., & Lazzari, V. (2015). Molecular phylogeny of South-East Asian arboreal murine rodents. Zoologica Scripta. doi:10.1111/zsc.12161

Pigneur, L. M., Dubuisson, C., Fournier-Chambrillon, C., Fournier, P., Laoué, E., Béreyziat, T., Dal Molin, A., Joubert, L., Lesclaux, P., Ruys, T., Morelec, J. Y., Bonnecaze, B., & Michaux, J. (2015). Etude génétique des populations férales de vison d'Amérique (Neovison vison) en France : résultats préliminaires [Paper presentation]. 38ième colloque francophone de mammalogie, Bordeaux, France.

Sakka, H., Henttonen, H., Baraket, G., Salhi-Hannachi, A., & Michaux, J. (2015). Phylogeography analysis and molecular evolution patterns of the nematode parasite Heligmosomum mixtum based on mitochondrial DNA sequences. Acta Parasitologica, 60 (1), 85-98. doi:10.1515/ap-2015-0011

Gennotte, V., Michaux, J., Prignon, C., Ovidio, M., & Mélard, C. (December 2014). Genetic structure of nase, Chondrostoma nasus, and common barbel, Barbus barbus (Teleostei, Cyprinidae) populations in South Belgium rivers: toward a rational management of conservation restocking [Poster presentation]. 21st Benelux Congress of Zoology, Liège, Belgium.

Mouton, A., Renaud, S., & Michaux, J. (19 September 2014). When morphometrics meets genetics: the case of the hazel dormouse, Muscardinus avellanarius [Paper presentation]. 9th INternational dormouse conference 2014, Svendborg, Denmark.

André, A., millien, V., & Michaux, J. (May 2014). Biological characteristics of a rodent species in expansion [Paper presentation]. Genomes to biomes.

André, A., gaitan, J., Millien, V., & Michaux, J. (2014). Étude du stress à long terme chez un rongeur (Peromyscus leucopus) [Poster presentation]. Colloque du CSBQ 2014.

Fontaine, M., Roland, K., Calves, I., Austerlitz, F., Palstra, F., Tolley, K., Ryan, M., Ferreira, M., Jauniaux, T., Llanova, A., Öztürk, A., Ridoux, V., Rogan, E., Sequeira, M., Siebert, U., Vikingsson, G., Borrell, A., Michaux, J., & Aguilar, A. (2014). Postglacial climate changes and rise of three ecotypes of harbour porpoises, Phocoena phocoena, in western Palearctic waters. Molecular Ecology. doi:10.1111/mec.12817

Frosch, C., Kraus, R. H. S., Angst, C., Allgöwer, R., Michaux, J., Teubner, J., & Nowak, C. (2014). The genetic legacy of multiple beaver reintroductions in central Europe. PLoS ONE, 9 (5). doi:10.1371/journal.pone.0097619

Latinne, A., Galan, M., Waengsothorn, S., Rojanadilok, P., Eiamampai, K., Sribuarod, K., & Michaux, J. (2014). Diet analysis of Leopoldamys neilli, a cave-dwelling rodent in Southeast Asia, using Next-Generation Sequencing from feces. Journal of Cave and Karst Studies, 76 (2), 139-145. doi:10.4311/2013LSC0100

Pigneur, L.-M., Marc, D., Fournier, P., Fournier-Chambrillon, C., Steinmetz, J., Rieu, L., Giralda-Carrera, G., Urra, F., Van Doninck, K., & Michaux, J. (2014). La loutre en France et Navarre. Bulletin de liaison des Mammalogistes de Midi-Pyrénées, 117-123.

pisano, J., Leboils, R., charbonnel, N., galan, M., henttonen, H., Hultu, O., & Michaux, J. (2014). Apparent absence of a barrier to nuclear gene flow in Central Finland between mitochondrial lineages of the bank vole (Myodes glareolus) [Poster presentation]. edenext congress.

Senn, H., Ogden, R., Frosch, C., Syrůčková, A., Campbell-Palmer, R., Munclinger, P., Durka, W., Kraus, R. H. S., Saveljev, A. P., Nowak, C., Stubbe, A., Stubbe, M., Michaux, J., Lavrov, V., Samiya, R., Ulevicius, A., & Rosell, F. (2014). Nuclear and mitochondrial genetic structure in the Eurasian beaver (Castor fiber) - implications for future reintroductions. Evolutionary Applications, 7 (6), 645-662. doi:10.1111/eva.12162

Smitz, N., Cornelis, D., Chardonnet, P., Caron, A., de Garine-Wichatitsky, M., Jori, F., Mouton, A., Latinne, A., Pigneur, L.-M., Melletti, M., Kanapeckas, K., Marescaux, J., Lopes pereira, C., & Michaux, J. (2014). Genetic structure of fragmented southern populations of African Cape buffalo (Syncerus caffer caffer). BMC Evolutionary Biology, 14, 203. doi:10.1186/s12862-014-0203-2

Tsangaras, K., Kolokotronis, S.-O., Ulrich, R. G., Morand, S., Michaux, J., & Greenwood, A. D. (2014). Negative purifying selection drives prion and doppel protein evolution. Journal of Molecular Evolution, 79 (1-2), 12-20. doi:10.1007/s00239-014-9632-1

Tsangaras, K., Wales, N., Sicheritz-Pontén, T., Rasmussen, S., Michaux, J., Ishida, Y., Morand, S., Kampmann, M.-L., Gilbert, M. T. P., & Greenwood, A. D. (2014). Hybridization capture using short PCR products enriches small genomes by capturing flanking sequences (CapFlank). PLoS ONE, 9 (10). doi:10.1371/journal.pone.0109101

Latinne, A., Waengsothorn, S., Rojanadilok, P., Eiamampai, K., Sribuarod, K., & Michaux, J. (05 September 2013). Diversity and endemism of Murinae rodents in Thai limestone karsts. Systematics and Biodiversity, 11 (3), 323-344. doi:10.1080/14772000.2013.818587

Latinne, A., Waengsothorn, S., & Michaux, J. (15 August 2013). Evolutionary history of Leopoldamys neilli, a karst endemic rodent in Southeast Asia, and implications for its conservation [Paper presentation]. 11th International Mammalogical Congress, Belfast, United Kingdom.

Gennotte, V., Ovidio, M., Michaux, J., Prignon, C., Poncin, P., Philippart, J.-C., & Mélard, C. (30 May 2013). Développement de repeuplements raisonnés en barbeaux et hotus : amélioration des techniques d'élevage et caractérisation de la diversité génétique des populations wallonnes [Paper presentation]. Apports scientifiques récents à la Gestion des Peuplements de Poissons et de leurs Habitats, Liège, Belgium.

Latinne, A., Waengsothorn, S., & Michaux, J. (13 March 2013). Specialists vs. Generalists in Thai limestone karsts: Comparative phylogeography of two Murinae rodents in Thailand [Paper presentation]. 2nd Southeast Asian Gateway Evolution, Berlin, Germany.

Fabre, P.-H., Pagès, M., Musser, G. G., Fitriana, Y. S., Fjeldså, J., Jennings, A., Jønsson, K. A., Kennedy, J., Michaux, J., Semiadi, G., Supriatna, N., & Helgen, K. M. (2013). A new genus of rodent from wallacea (Rodentia: Muridae: Murinae: Rattini), and its implication for biogeography and Indo-Pacific Rattini systematics. Zoological Journal of the Linnean Society, 169 (2), 408-447. doi:10.1111/zoj.12061

Michaux, J. (2013). New advances on the phylogeography and molecular systematics of the Eurasian rodents2013. In Abstract book of the 13th Rodens & Spatium conference.

Michaux, J. (2013). Conservation genetics : new tools and hope for threatened species. In abstract book of the 6th European congress of mammalogy.

Mouton, A., Grill, A., Sara, M., krystufek, B., Randi, E., Amori, G., Juskaitis, R., Aloise, G., Mortelliti, A., Matur, F., Elmeros, M., Vilhelmesen, H., Verbeylen, G., Panchetti, F., & Michaux, J. (2013). Molecular phylogeographt of the common dormouse. In Abstract book of the 13th Rodens & Spatium conference.

Navia, D., Mendonça, R. S., Ferragut, F., Miranda, L. C., Trincado, R. C., Michaux, J., & Navajas, M. (2013). Cryptic diversity in brevipalpus mites (tenuipalpidae). Zoologica Scripta, 42 (4), 406-426. doi:10.1111/zsc.12013

Pisano, J., Pages, M., Lebedev, V., Banikova, A., Shenbrot, G., & Michaux, J. (2013). Systematics and molecular phyulgeny of the Dipodidae superfamily (Rodentia, Mammalia). In Abstract book of the 13th Rodens & Spatium conference.

Smitz, N., Berthouly, C., Cornélis, D., Heller, R., van Hooft, P., Chardonnet, P., Caron, A., Prins, H., van Vuuren, B. J., de Iongh, H., & Michaux, J. (2013). Pan-African Genetic Structure in the African Buffalo (Syncerus caffer): Investigating Intraspecific Divergence. PLoS ONE, 8 (2). doi:10.1371/journal.pone.0056235

Latinne, A., Waengsothorn, S., Rojanadilok, P., Eiamampai, K., Sribuarod, K., & Michaux, J. (31 October 2012). Combined Mitochondrial and Nuclear Markers Revealed a Deep Vicariant History for Leopoldamys neilli, a Cave-Dwelling Rodent of Thailand. PLoS ONE, 7 (10), 47670. doi:10.1371/journal.pone.0047670

Latinne, A., Waengsothorn, S., Herbreteau, V., & Michaux, J. (15 May 2012). Phylogeography and evolutionary history of Leopoldamys neilli, a Murinae rodent endemic to limestone karsts, in Thailand [Paper presentation]. Rodent survey: from trapping to pathogen screening, Bangkok, Thailand.

Guillot, G., Renaud, S., Ledevin, R., Michaux, J., & Claude, J. (2012). A unifying model for the analysis of phenotypic, genetic, and geographic data. Systematic Biology, 61 (6), 897-911. doi:10.1093/sysbio/sys038

Helvaci, Z., Renaud, S., Ledevin, R., Adriaens, D., Michaux, J., Çolak, R., Kankiliç, T., Kandemir, I., Yiǧit, N., & Çolak, E. (2012). Morphometric and genetic structure of the edible dormouse (Glis glis): A consequence of forest fragmentation in Turkey. Biological Journal of the Linnean Society, 107 (3), 611-623. doi:10.1111/j.1095-8312.2012.01952.x

Ledevin, R., Quéré, J.-P., Michaux, J., & Renaud, S. (2012). Can tooth differentiation help to understand species coexistence? The case of wood mice in China. Journal of Zoological Systematics and Evolutionary Research, 50 (4), 315-327. doi:10.1111/j.1439-0469.2012.00666.x

Malé, P.-J. G., Martin, J.-F., Galan, M., Deffontaine, V., Bryja, J., Cosson, J.-F., Michaux, J., & Charbonnel, N. (2012). Discongruence of Mhc and cytochrome b phylogeographical patterns in Myodes glareolus (Rodentia: Cricetidae). Biological Journal of the Linnean Society, 105 (4), 881-899. doi:10.1111/j.1095-8312.2011.01799.x

Mouton, A., Verbeylen, G., & Michaux, J. (September 2011). Genetic diversity and population structure of the common dormouse, Muscardinus avellanarius, in Flanders region (Belgium) [Poster presentation]. International Dormouse Conference, Ostritz, Germany.

Latinne, A., Waengsothorn, S., Herbreteau, V., & Michaux, J. (21 July 2011). Evidence of complex phylogeographic structure for the threatened rodent Leopoldamys neilli endemic to limestone karsts of Thailand [Paper presentation]. VIth European Congress of Mammalogy, Paris, France.

Mouton, A., Renaud, S., & Michaux, J. (July 2011). When morphometrics meet genetics: the case of the common dormouse, Muscardinus avellanarius [Poster presentation]. VIth European Mammal Conference, Paris, France.

Cabria, M. T., Michaux, J., Gómez-Moliner, B. J., Skumatov, D., Maran, T., Fournier, P., López De Luzuriaga, J., & Zardoya, R. (2011). Bayesian analysis of hybridization and introgression between the endangered european mink (Mustela lutreola) and the polecat (Mustela putorius). Molecular Ecology, 20 (6), 1176-1190. doi:10.1111/j.1365-294X.2010.04988.x

Dsouli-Aymes, N., Michaux, J., De Stordeur, E., Couloux, A., Veuille, M., & Duvallet, G. (2011). Global population structure of the stable fly (Stomoxys calcitrans) inferred by mitochondrial and nuclear sequence data. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases, 11 (2), 334-342. doi:10.1016/j.meegid.2010.11.001

Dsouli, N., Delsuc, F., Michaux, J., De Stordeur, E., Couloux, A., Veuille, M., & Duvallet, G. (2011). Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae). Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases, 11 (3), 663-670. doi:10.1016/j.meegid.2011.02.004

Kaleme, P. K., Bates, J. M., Belesi, H. K., Bowie, R. C. K., Gambalemoke, M., Kerbis-Peterhans, J., Michaux, J., Mwanga, J. M., Ndara, B. R., Taylor, P. J., & Van Vuuren, B. J. (2011). Origin and putative colonization routes for invasive rodent taxa in the democratic Republic of Congo. African Zoology, 46 (1), 133-145. doi:10.3377/004.046.0104

Latinne, A., Waengsothorn, S., Herbreteau, V., & Michaux, J. (2011). Thai limestone karsts: an impending biodiversity crisis. In The 1st EnvironmentAsia International Conference.

Latinne, A., Waengsothorn, S., Risterucci, A. M., & Michaux, J. (2011). Isolation, characterization and PCR multiplexing of polymorphic microsatellite markers in the threatened murine rodent, Leopoldamys neilli. Conservation Genetics Resources, 3, 511-513. doi:10.1007/s12686-011-9391-x

Michaux, J. (2011). Conservation genetics : new tools and hope for threatened species. In abstract book of the 6th European congress of mammalogy.

Rivière-Dobigny, T., Herbreteau, V., Khamsavath, K., Douangboupha, B., Morand, S., Michaux, J., & Hugot, J. P. (2011). Preliminary assessment of the genetic population structure of the enigmatic species Laonastes aenigmamus (Rodentia: Diatomyidae). Journal of Mammalogy, 92 (3), 620-628. doi:10.1644/10-MAMM-A-028.1

Latinne, A., Waengsothorn, S., Herbreteau, V., & Michaux, J. (23 September 2010). Investigating the intraspecific biodiversity of the threatened rodent Leopoldamys neilli in Southeast Asia [Paper presentation]. 14th Evolutionary Biology Meeting, Marseilles, France.

Berthouly-Salazar, C., Rognon, X., Van, T. N., Gely, M., Chi, C. V., Tixier-Boichard, M., Bed'Hom, B., Bruneau, N., Verrier, E., Maillard, J. C., & Michaux, J. (2010). Vietnamese chickens: a gate towards Asian genetic diversity. BMC Genetics, 11, 53. doi:10.1186/1471-2156-11-53

Fontaine, M. C., Tolley, K. A., Michaux, J., Birkun, A. J., Ferreira, M., Jauniaux, T., Llavona, A., Ozturk, B., Ozturk, A. A., Ridoux, V., Rogan, E., Sequeira, M., Bouquegneau, J.-M., & Baird, S. J. E. (2010). Genetic and historic evidence for climate-driven population fragmentation in a top cetacean predator: the harbour porpoises in European water. Proceedings of the Royal Society. Biological Sciences, 277 (1695), 2829-37. doi:10.1098/rspb.2010.0412

Guérécheau, A., Ledevin, R., Henttonen, H., Deffontaine Deurbroeck, V., Michaux, J., Chevret, P., & Renaud, S. (2010). Seasonal variation in molar outline of bank voles: An effect of wear? Mammalian Biology. doi:10.1016/j.mambio.2009.03.013

Hurner, H., Krystufek, B., Sara, M., Ribas, A., Ruch, T., Sommer, R., Ivashkina, V., & Michaux, J. (2010). Mitochondrial phylogeography of the edible dormouse (Glis glis) in the western Palearctic region. Journal of Mammalogy, 91 (1), 233-242. doi:10.1644/08-MAMM-A-392R1.1

Ledevin, R., Michaux, J., Deffontaine, V., Henttonen, H., & Renaud, S. (2010). Evolutionary history of the bank vole Myodes glareolus: a morphometric perspective. Biological Journal of the Linnean Society, 100 (3), 681-694. doi:10.1111/j.1095-8312.2010.01445.x

Pagès, M., Chaval, Y., Herbreteau, V., Waengsothorn, S., Cosson, J.-F., Hugot, J.-P., Morand, S., & Michaux, J. (2010). Refining the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries. BMC Evolutionary Biology, 10 (184), 184. doi:10.1186/1471-2148-10-184

Sakka, H., QUÉRÉ, J. P., Kartavtseva, I., Pavlenko, M., Chelomina, G., Atopkin, D., Bogdanov, A., & Michaux, J. (2010). Comparative phylogeography of four Apodemus species (Mammalia: Rodentia) in the Asian Far East: evidence of Quaternary climatic changes in their genetic structure. Biological Journal of the Linnean Society, 100 (4), 797-821. doi:10.1111/j.1095-8312.2010.01477.x

Pagès, M., Latinne, A., Rivière, T., & Michaux, J. (28 March 2009). Inter and intra genetic biodiversity in South East asian rodents: new insights for their conservation [Paper presentation]. Symposium on Biodiversity hotspots, Evolution & Conservation, Luxembourg, Luxembourg.

Deffontaine Deurbroeck, V., Ledevin, R., Fontaine, M., Quéré, J.-P., Renaud, S., Libois, R., & Michaux, J. (2009). A relict bank vole lineage highlights the biogeographic history of the Pyrenean region in Europe. Molecular Ecology. doi:10.1111/j.1365-294X.2009.04162.x

Dubey, S., Michaux, J., Brunner, H., Hutterer, R., & Vogel, P. (2009). False phylogenies on wood mice due to cryptic cytochrome-b pseudogene. Molecular Phylogenetics and Evolution, 50 (3), 633-41. doi:10.1016/j.ympev.2008.12.008

Huerner, H., Martin, J., Ribas, A., Arrizabalaga, A., & Michaux, J. (2009). Isolation, characterization and PCR multiplexing of polymorphic microsatellite markers in the edible dormouse, Glis glis. Molecular Ecology Resources, 9 (3), 885-887. doi:10.1111/j.1755-0998.2008.02365.x

Hürner, H., & Michaux, J. (2009). Ecology of the edible dormouse (Glis glis) in a western edge population in southern Belgium. Vie et Milieu, 59 (2), 243-250.

Riviere-Dobigny, T., Doan, L. P., Quang, N. L., Maillard, J.-C., & Michaux, J. (2009). Species identification, molecular sexing and genotyping using non-invasive approaches in two wild bovids species: Bos gaurus and Bos javanicus. Zoo Biology, 28 (2), 127-36. doi:10.1002/zoo.20211

Cabria, M. T., Gomez-Moliner, B., Zardoya, R., & Michaux, J. (2008). Molecular analysis for hybrid detection between European mink (Mustela lutreola) and polecat (Mustela putorius). In abstract book of the 7th Baltic Theriological conference.

Cosson, J. F., Bryja, J., Deter, J., Galan, M., Chaval, Y., Henttonen, H., Hugot, J. P., Michaux, J., Morand, S., & Charbonnel, N. (2008). Susceptibility to hantavirus infection and MHC class II gene diversity in rodents. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases, 8 (4), 19-S19.

Henttonen, H., Buchy, P., Suputtamongkol, Y., Jittapalapong, S., Herbreteau, V., Laakkonen, J., Chaval, Y., Galan, M., Dobigny, G., Charbonnel, N., Michaux, J., Cosson, J.-F., Morand, S., & Hugot, J.-P. (2008). Recent discoveries of new hantaviruses widen their range and question their origins. Annals of the New York Academy of Sciences, 1149, 84-9. doi:10.1196/annals.1428.064

Hourlay, F., Libois, R., D'Amico, F., Sara, M., O'Halloran, J., & Michaux, J. (2008). Evidence of a highly complex phylogeographic structure on a specialist river bird species, the dipper (Cinclus cinclus). Molecular Phylogenetics and Evolution, 49 (2), 435-44. doi:10.1016/j.ympev.2008.07.025

Janssens, X., Fontaine, M. C., Michaux, J., Libois, R., de Kermabon, J., Defourny, P., & Baret, P. V. (2008). Genetic pattern of the recent recovery of European otters in southern France. Ecography, 31 (2), 176-186. doi:10.1111/j.0906-7590.2008.4936.x

Michaux, J. (2008). Phylogeographic history of north European mammals : implication on their genetic diversity and their conservation. In Abstract book of the 7th Baltic Theriological conference.

Nieberding, C. M., Durette-Desset, M.-C., Vanderpoorten, A., Casanova, J. C., Ribas, A., Deffontaine, V., Feliu, C., Morand, S., Libois, R., & Michaux, J. (2008). Geography and host biogeography matter for understanding the phylogeography of a parasite. Molecular Phylogenetics and Evolution, 47 (2), 538-54. doi:10.1016/j.ympev.2008.01.028

Fontaine, M. C., Baird, S. J. E., Piry, S., Ray, N., Tolley, K. A., Duke, S., Birkun, A., Ferreira, M., Jauniaux, T., Llavona, A., Ozturk, B., Ozturk, A. A., Ridoux, V., Rogan, E., Sequeira, M., Siebert, U., Vikingsson, G. A., Bouquegneau, J.-M., & Michaux, J. (25 July 2007). Rise of oceanographic barriers in continuous populations of a cetacean: the genetic structure of harbour porpoises in Old World waters. BMC Biology, 5, 30. doi:10.1186/1741-7007-5-30

Das, K., Drouguet, O., Fontaine, M., Holsbeek, L., Jauniaux, T., Michaux, J., Joiris, C., & Bouquegneau, J.-M. (2007). VIABILITY OF THE NORTHEAST ATLANTIC HARBOUR PORPOISE AND SEAL POPULATION (GENETIC AND ECOLOGICAL STUDY). (SCIENTIFIC SUPPORT PLAN FOR A SUSTAINABLE DEVELOPMENT POLICY). Politique Scientifique Fédérale.

Dusfour, I., Michaux, J., Harbach, R. E., & Manguin, S. (2007). Speciation and phylogeography of the Southeast Asian Anopheles sundaicus complex. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics of Infectious Diseases, 7 (4), 484-93. doi:10.1016/j.meegid.2007.02.003

Renaud, S., & Michaux, J. (2007). Mandibles and molars of the wood mouse, Apodemus sylvaticus (L.): integrated latitudinal pattern and mosaic insular evolution. Journal of Biogeography, 34 (2), 339-355. doi:10.1111/j.1365-2699.2006.01597.x

Neumann, K., Michaux, J., Lebedev, V., Yigit, N., Colak, E., Ivanova, N., Poltoraus, A., Surov, A., Markov, G., Maak, S., Neumann, S., & Gattermann, R. (April 2006). Molecular phylogeny of the Cricetinae subfamily based on the mitochondrial cytochrome b and 12S rRNA genes and the nuclear vWF gene. Molecular Phylogenetics and Evolution, 39 (1), 135-148. doi:10.1016/j.ympev.2006.01.010

Christe, P., Morand, S., & Michaux, J. (2006). Implications for conservation biology. In S. Morand (Ed.), Micro-mammals and macroparasites: from evolutionary ecology to management (pp. 590-616). Tokyo, Japan: Springer-Verlag.

Dusfour, I., Michaux, J., & Manguin, S. (2006). Phylogeography of the Southeast Asian sundaicus complex inferred by differential evolution markers. American Journal of Tropical Medicine and Hygiene, 75 (5), 590.

Hugot, J. P., Suputtamongkol, Y., Jittapalapong, S., Morand, S., Michaux, J., Cosson, J. F., Dobigny, G., & Herbreteau, V. (2006). Rodents biodiversity and associated infections in Southeast Asia. Genetics in Infectious Diseases, 8 (4), 19.

Kotlìk, P., Deffontaine Deurbroeck, V., Mascheretti, S., Zima, J., Michaux, J., & Searle, J. (2006). A northern glacial refugium for bank voles (Clethrionomys glareolus). Proceedings of the National Academy of Sciences of the United States of America, 103 (40), 14860-14864. doi:10.1073/pnas.0603237103

Nieberding, C. M., Morand, S., Libois, R., & Michaux, J. (2006). Parasites and the island syndrome: the colonization of the western Mediterranean islands by Heligmosomoides polygyrus (Dujardin, 1845). Journal of Biogeography, 33 (7), 1212-1222. doi:10.1111/j.1365-2699.2006.01503.x

Michaux, J., Bellinvia, E., & Lymberakis, P. (May 2005). Taxonomy, evolutionary history and biogeography of the broad-toothed field mouse (Apodemus mystacinus) in the eastern Mediterranean area based on mitochondrial and nuclear genes. Biological Journal of the Linnean Society, 85 (1), 53-63. doi:10.1111/j.1095-8312.2005.00469.x

Deffontaine Deurbroeck, V., Libois, R., Kotlík, P., Sommer, R., Nieberding, C., Paradis, E., Searle, J., & Michaux, J. (2005). Beyond the Mediterranean peninsulas: evidence of central European glacial refugia for a temperate forest mammal species, the bank vole (Clethrionomys glareolus). Molecular Ecology, 14 (6), 1727-1739. doi:10.1111/j.1365-294X.2005.02506.x

Michaux, J., Hardy, O. J., Justy, F., Fournier, P., Kranz, A., Cabria, M., Davison, A., Rosoux, R., & Libois, R. (2005). Conservation genetics and population history of the threatened European mink Mustela lutreola, with an emphasis on the west European population. Molecular Ecology, 14 (8), 2373-88. doi:10.1111/j.1365-294X.2005.02597.x

Michaux, J., Libois, R., & Filippucci, M.-G. (2005). So close and so different: comparative phylogeography of two small mammal species, the yellow-necked fieldmouse (Apodemus flavicollis) and the woodmouse (Apodemus sylvaticus) in the Western Palearctic region. Heredity, 94 (1), 52-63. doi:10.1038/sj.hdy.6800561

Neumann, K., Michaux, J., Maak, S., Jansman, H. A. H., Kayser, A., Mundt, G., & Gattermann, R. (2005). Genetic spatial structure of European common hamsters (Cricetus cricetus)--a result of repeated range expansion and demographic bottlenecks. Molecular Ecology, 14 (5), 1473-83. doi:10.1111/j.1365-294X.2005.02519.x

Nieberding, C. M., Libois, R., Douady, C. J., Morand, S., & Michaux, J. (2005). Phylogeography of a nematode (Heligmosomoides polygyrus) in the western Palearctic region: persistence of northern cryptic populations during ice ages? Molecular Ecology, 14 (3), 765-79. doi:10.1111/j.1365-294X.2005.02440.x

Michaux, J., Libois, R., Davison, A., Chevret, P., & Rosoux, R. (2004). Is the western population of the European mink, (Mustela lutreola), a distinct Management Unit for conservation? Biological Conservation, 115 (3), 357-367. doi:10.1016/S0006-3207(03)00151-4

Michaux, J., Libois, R., Paradis, E., & Filippucci, M.-G. (2004). Phylogeographic history of the yellow-necked fieldmouse (Apodemus flavicollis) in Europe and in the Near and Middle East. Molecular Phylogenetics and Evolution, 32 (3), 788-98. doi:10.1016/j.ympev.2004.02.018

Nieberding, C., Morand, S., Douady, C., Libois, R., & Michaux, J. (2004). A parasite reveals cryptic phylogeographic history of its host. In P. Mas coma (Ed.), Abstract book the IX EUROPEAN MULTICOLLOQUIUM OF PARASITOLOGY.

Nieberding, C., Morand, S., Libois, R., & Michaux, J. (2004). A Parasite Reveals Cryptic Phylogeographic History of Its Host: The Colonization of the Western Mediterranean Islands. Multidisciplinarity for Parasites, Vectors and Parasitic Diseases, 1, 279-286.

Nieberding, C., Morand, S., Libois, R., & Michaux, J. (2004). A parasite reveals cryptic phylogeographic history of its host. Proceedings of the Royal Society. Biological Sciences, 271 (1557), 2559-68. doi:10.1098/rspb.2004.2930

Michaux, J., Magnanou, E., Paradis, E., Nieberding, C., & Libois, R. (2003). Mitochondrial phylogeography of the Woodmouse (Apodemus sylvaticus) in the Western Palearctic region. Molecular Ecology, 12 (3), 685-97. doi:10.1046/j.1365-294X.2003.01752.x

Renaud, S., & Michaux, J. (2003). Adaptive latitudinal trends in the mandible shape of Apodemus wood mice. Journal of Biogeography, 30 (10), 1617-1628. doi:10.1046/j.1365-2699.2003.00932.x

Filippucci, M. G., Macholan, M., & Michaux, J. (2002). Genetic variation and evolution in the genus Apodemus (Muridae : Rodentia). Biological Journal of the Linnean Society, 75 (3), 395-419. doi:10.1046/j.1095-8312.2002.00032.x

Michaux, J., Chevret, P., Filippucci, M.-G., & Macholan, M. (2002). Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA. Molecular Phylogenetics and Evolution, 23 (2), 123-36. doi:10.1016/S1055-7903(02)00007-6

Michaux, J., De Bellocq, J. G., Sara, M., & Morand, S. (2002). Body size increase in insular rodent populations: a role for predators? Global Ecology and Biogeography Letters, 11 (5), 427-436. doi:10.1046/j.1466-822x.2002.00301.x

Michaux, J., Magnanou, E., Nieberding, C., & Libois, R. (2002). Phylogéographie mitochondriale du mulot sylvestre (Apodemus sylvaticus) dans la région paléarctique occidentale. Biosystema, Systématique et biogéographie, 20, 115-130.

Chevret, P., Catzeflis, F., & Michaux, J. (2001). "Acomyinae": new molecular evidences for a muroid taxon (Rodentia : Muridae). African Small Mammals, 109.

Libois, R., Michaux, J., Ramalhinho, M. G., Maurois, C., & Sara, M. (2001). On the origin and systematics of the northern African wood mouse (Apodemus sylvaticus) populations: a comparative study of mtDNA restriction patterns. Canadian Journal of Zoology, 79 (8), 1503-1511. doi:10.1139/cjz-79-8-1503

Michaux, J., Kinet, S., Filippucci, M. G., Libois, R., Besnard, A., & Catzeflis, F. (2001). Molecular identification of three sympatric species of wood mice (Apodemus sylvaticus, A-flavicollis, A-alpicola) in western Europe (Muridae : Rodentia). Molecular Ecology Notes, 1 (4), 260-263. doi:10.1046/j.1471-8278.2001.00098.x

Michaux, J., Reyes, A., & Catzeflis, F. (2001). Evolutionary history of the most speciose mammals: molecular phylogeny of muroid rodents. Molecular Biology and Evolution, 18 (11), 2017-31. doi:10.1093/oxfordjournals.molbev.a003743

Michaux, J., & Catzeflis, F. (2000). The bushlike radiation of muroid rodents is exemplified by the molecular phylogeny of the LCAT nuclear gene. Molecular Phylogenetics and Evolution, 17 (2), 280-93. doi:10.1006/mpev.2000.0849

Michaux, J., Libois, R., Ramalhinho, M. G., & Maurois, C. (1998). On the mtDNA restriction patterns variation of the Iberian wood mouse (Apodemus sylvaticus). Comparison with other west Mediterranean populations. Hereditas, 129 (3), 187-94. doi:10.1111/j.1601-5223.1998.00187.x

Michaux, J., Sara, M., Libois, R., & Matagne, R.-F. (1998). Is the woodmouse (Apodemus sylvaticus) of sicily a distinct species? Belgian Journal of Zoology, 128 (2), 211-214.

Libois, R., Torrico, J., Ramalhinho, M. G., Michaux, J., Fons, R., & Mathias, M. D. L. (1996). Les populations de rats noirs insulaires de l'ouest de l'Europe. Essai préliminaire de caractérisation génétique (caryotype et ADN mitochondrial). Vie et Milieu, 46 (3-4), 213-218.

Michaux, J., Filippucci, M. G., Libois, R., Fons, R., & Matagne, R.-F. (1996). Biogeography and taxonomy of Apodemus sylvaticus (the woodmouse) in the Tyrrhenian region: Enzymatic variations and mitochondrial DNA restriction pattern analysis. Heredity, 76 (Part 3), 267-277. doi:10.1038/hdy.1996.40

Michaux, J., Libois, R., & Fons, R. (1996). Différenciation génétique et morphologique du mulot, Apodemus sylvaticus, dans le bassin Méditerranéen occidental. Vie et Milieu, 46 (3-4), 193-203.