Reference : Collaborative analysis of multi-gigapixel imaging data using Cytomine
Scientific journals : Article
Engineering, computing & technology : Computer science
http://hdl.handle.net/2268/191278
Collaborative analysis of multi-gigapixel imaging data using Cytomine
English
Marée, Raphaël mailto [Université de Liège > Electrical Engineering and Computer Science > GIGA-Research > > >]
Rollus, Loïc mailto [Université de Liège - ULg > Electrical Engineering and Computer Science > GIGA-Research > >]
Stévens, Benjamin mailto [Université de Liège - ULg > Electrical Engineering and Computer Science > GIGA-Research > >]
Hoyoux, Renaud mailto [Université de Liège > > GIGA-Research >]
Louppe, Gilles mailto [Université de Liège - ULg > Electrical Engineering and Computer Science > GIGA-Research > >]
Vandaele, Rémy mailto [Université de Liège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Algorith. des syst. en interaction avec le monde physique >]
Begon, Jean-Michel mailto [Université de Liège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Algorith. des syst. en interaction avec le monde physique >]
Kainz, Philipp mailto [Medical University of Graz > Institute of Biophysics > > >]
Geurts, Pierre mailto [Université de Liège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Algorith. des syst. en interaction avec le monde physique >]
Wehenkel, Louis mailto [Université de Liège > Dép. d'électric., électron. et informat. (Inst.Montefiore) > Systèmes et modélisation >]
10-Jan-2016
Bioinformatics
Oxford University Press - Journals Department
7
Yes (verified by ORBi)
International
1367-4803
1460-2059
Oxford
United Kingdom
[en] Motivation: Collaborative analysis of massive imaging datasets is essential to enable scientific
discoveries.
Results: We developed Cytomine to foster active and distributed collaboration of multidisciplinary teams for large-scale image-based studies. It uses web development methodologies and machine learning in order to readily organize, explore, share, and analyze (semantically and quantitatively) multi-gigapixel imaging data over the internet. We illustrate how it has been used in several biomedical applications.
Availability: Cytomine (http://www.cytomine.be/) is freely available under an open-source license
from http://github.com/cytomine/. A documentation wiki (http://doc.cytomine.be) and a demo server (http://demo.cytomine.be) are also available.
Systems and Modeling
Région wallonne : Direction générale des Technologies, de la Recherche et de l'Energie - DGTRE
CYTOMINE
Researchers ; Professionals ; Students
http://hdl.handle.net/2268/191278
10.1093/bioinformatics/btw013
http://www.cytomine.be
This is the "advance access" version of an article accepted for publication in Bioinformatics Journal following peer review. The version of record doi: 10.1093/bioinformatics/btw013 will be available online at: http://http://bioinformatics.oxfordjournals.org/

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