Vanderpoorten, Alain ; Université de Liège > Département de Biologie, Ecologie et Evolution > Biologie de l'évolution et de la conservation - aCREA-Ulg
Language :
English
Title :
Macaronesia is a departure gate of anagenetic speciation in the moss genus Rhynchostegiella
Aigoin, D.A., Devos, N., Huttunen, S., Ignatov, M.S., Gonzalez-Mancebo, J.M. & Vanderpoorten, A. (2009) And if Engler was not completely wrong? Evidence for multiple evolutionary origins in the moss flora of Macaronesia. Evolution, 63, 3248-3257.
Bell, N.E. & Hyvönen, J. (2010) Phylogeny of the moss class Polytrichopsida (Bryophyta): generic-level structure and incongruent gene trees. Molecular Phylogenetics and Evolution, 55, 381-398.
Bellemain, E. & Ricklefs, R.E. (2008) Are islands the end of the colonization road? Trends in Ecology and Evolution, 23, 461-468.
Bromham, L. & Woolfit, M. (2004) Explosive radiations and the reliability of molecular clocks: island endemic radiations as a test case. Systematic Biology, 53, 758-766.
Carine, M.A., Russell, S.J., Santos-Guerra, A. & Francisco-Ortega, J. (2004) Relationships of the Macaronesian and Mediterranean floras: molecular evidence for multiple colonizations into Macaronesia and back-colonization of the continent in Convolvulus (Convolvulaceae). American Journal of Botany, 91, 1070-1085.
Caujapé-Castells, J. (2011) Jesters, red queens, boomerangs and surfers: a molecular outlook on the diversity of the Canarian endemic flora. The biology of island floras (ed. by D. Bramwell and J. Caujapé-Castells ), pp. 284-324. Cambridge University Press, Cambridge, UK.
Claramunt, S., Derryberry, E.P., Remsen, J.V. & Brumfield, R.T. (2011) High dispersal ability inhibits speciation in a continental radiation of passerine birds. Proceedings of the Royal Society B: Biological Sciences, 279, 1567-1574.
Cronberg, N. (2002) Colonization dynamics of the clonal moss Hylocomium splendens on islands in a Baltic land uplift area: reproduction, genet distribution and genetic variation. Journal of Ecology, 90, 925-935.
Cropper, T. (2013) The weather and climate of Macaronesia: past, present and future. Weather, 68, 300-307.
Doyle, J.J. & Doyle, J.L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11-15.
Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969-1973.
Emerson, B.C. & Kolm, N. (2005) Species diversity can drive speciation. Nature, 434, 1015-1017.
Ezard, T., Fujisawa, T. & Barraclough, T.G. (2009) splits: SPecies' LImits by Threshold Statistics. R package version 1.0-18/r45. Available at: http://r-forge.r-project.org/projects/splits/ (accessed 1 February 2014).
Fernández-Mazuecos, M. & Vargas, P. (2011) Genetically depauperate in the continent but rich in oceanic islands: Cistus monspeliensis (Cistaceae) in the Canary Islands. PLoS ONE, 6, e17172.
Fernández-Palacios, J.M., de Nascimento, L., Otto, R., Delgado, J.D., García-del-Rey, E., Arévalo, J.R. & Whittaker, R.J. (2011) A reconstruction of Palaeo-Macaronesia, with particular reference to the long-term biogeography of the Atlantic island laurel forests. Journal of Biogeography, 38, 226-246.
Fujisawa, T. & Barraclough, T.G. (2013) Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Systematic Biology, 62, 707-724.
Givnish, T.J. (2010) Ecology of plant speciation. Taxon, 59, 1326-1366.
Gradstein, S.R. & Ziemmeck, F. (2014) CDF checklist of Galapagos horn- & liverworts. Available at: http://www.darwinfoundation.org/datazone/checklists/bryophytes/anthocerotophyta-hepatophyta/ (accessed 28 January 2014).
Grundmann, M., Ansell, S.W., Russell, S.J., Koch, M.A. & Vogel, J.C. (2007) Genetic structure of the widespread and common Mediterranean bryophyte Pleurochaete squarrosa (Brid.) Lindb. (Pottiaceae) - evidence from nuclear and plastidic DNA sequence variation and allozymes. Molecular Ecology, 16, 709-722.
Heaney, L.R. (2007) Is a new paradigm emerging for oceanic island biogeography? Journal of Biogeography, 34, 753-757.
Heinrichs, J., Dong, S., Schäfer-Verwimp, A., Pócs, T., Feldberg, K., Czumaj, A., Schmidt, A.R., Reitner, J., Renner, M.A.M., Hentschel, J., Stech, M. & Schneider, H. (2013) Molecular phylogeny of the leafy liverwort Lejeunea (Porellales): evidence for a Neotropical origin, uneven distribution of sexual systems and insufficient taxonomy. PLoS ONE, 8, e82547.
Heleno, R.H., Olesen, J.M., Nogales, M., Vargas, P. & Traveset, A. (2012) Seed dispersal networks in the Galápagos and the consequences of alien plant invasions. Proceedings of the Royal Society B: Biological Sciences, 280, 20122112.
Hutsemékers, V., Hardy, O.J., Mardulyn, P., Shaw, A.J. & Vanderpoorten, A. (2010) Macroecological patterns of genetic structure and diversity in the aquatic moss Platyhypnidium riparioides. New Phytologist, 185, 852-864.
Hutsemékers, V., Szövényi, P., Shaw, A.J., González-Mancebo, J.-M., Muñoz, J. & Vanderpoorten, A. (2011) Oceanic islands are not sinks of biodiversity in spore-producing plants. Proceedings of the National Academy of Sciences USA, 108, 18989-18994.
Kisel, Y. & Barraclough, T.G. (2010) Speciation has a spatial scale that depends on levels of gene flow. The American Naturalist, 175, 316-334.
Laenen, B., Shaw, B., Schneider, H. et al. (2014) Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nature Communications, 5, 6134.
Lanfear, R., Calcott, B., Ho, S.Y.W. & Guindon, S. (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29, 1695-1701.
Lewis, L.R., Rozzi, R. & Goffinet, B. (2014) Direct long-distance dispersal shapes a New World amphitropical disjunction in the dispersal-limited dung moss Tetraplodon (Bryopsida: Splachnaceae). Journal of Biogeography, 41, 2385-2395.
Librado, P. & Rozas, J. (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
Matzke, N.J. (2013) Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing. Frontiers of Biogeography, 5, 242-248.
Matzke, N.J. (2014) Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Systematic Biology, 63, 951-970.
McDaniel, S.F., Von Stackelberg, M., Richardt, S., Quatrano, R.S., Reski, R. & Rensing, S.A. (2010) The speciation history of the Physcomitrium-Physcomitrella species complex. Evolution, 64, 217-231.
Monaghan, M.T., Wild, R., Elliot, M., Fujisawa, T., Balke, M., Inward, D.J.G., Lees, D.C., Ranaivosolo, R., Eggleton, P., Barraclough, T.G. & Vogler, A.P. (2009) Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Systematic Biology, 58, 298-311.
Nogué, S., de Nascimento, L., Fernández-Palacios, J.M., Whittaker, R.J. & Willis, K.J. (2013) The ancient forests of La Gomera, Canary Islands, and their sensitivity to environmental change. Journal of Ecology, 101, 368-377.
O'Shea, B.J. (2006) Checklist of the mosses of sub-Saharan Africa. Tropical Bryology Research Reports, 6, 1-252.
Patiño, J., Bisang, I., Hedenäs, L., Dirkse, G., Bjarnason, Á.H., Ah-Peng, C. & Vanderpoorten, A. (2013a) Baker's law and the island syndromes in bryophytes. Journal of Ecology, 101, 1245-1255.
Patiño, J., Medina, R., Vanderpoorten, A., González-Mancebo, J.M., Werner, O., Devos, N., Mateo, R.G., Lara, F. & Ros, R.M. (2013b) Origin and fate of the single-island endemic moss Orthotrichum handiense. Journal of Biogeography, 40, 857-868.
Patiño, J., Carine, M.A., Fernández-Palacios, J.M., Otto, R., Schaefer, H. & Vanderpoorten, A. (2014) The anagenetic world of spore-producing plants. New Phytologist, 201, 305-311.
Patiño, J., Carine, M.A., Mardulyn, P., Devos, N., Mateo, R.G., González-Mancebo, J.M., Shaw, A.J. & Vanderpoorten, A. (2015) Approximate Bayesian computation reveals the crucial role of oceanic islands for the assembly of continental biodiversity. Systematic Biology, 64, 579-589.
Pinto, G., Mahler, D.L., Harmon, L.J. & Losos, J.B. (2008) Testing the island effect in adaptive radiation: rates and patterns of morphological diversification in Caribbean and mainland Anolis lizards. Proceedings of the Royal Society B: Biological Sciences, 275, 2749-2757.
Pirie, M.D., Humphreys, A.M., Antonelli, A., Galley, C. & Linder, H.P. (2012) Model uncertainty in ancestral area reconstruction: a parsimonious solution? Taxon, 61, 652-664.
Pisa, S., Werner, O., Vanderpoorten, A., Magdy, M. & Ros, R.M. (2013) Elevational patterns of genetic variation in the cosmopolitan moss Bryum argenteum (Bryaceae). American Journal of Botany, 100, 2000-2008.
Pons, J., Barraclough, T.G., Gomez-Zurita, J., Cardoso, A., Duran, D.P., Hazell, S., Kamoun, S., Sumlin, W.D. & Vogler, A.P. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology, 55, 595-609.
Rabosky, D.L. (2014) Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees. PLoS ONE, 9, e89543.
Rabosky, D.L., Grundler, M., Anderson, C., Shi, J.J., Brown, J.W., Huang, H. & Larson, J.G. (2014) BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees. Methods in Ecology and Evolution, 5, 701-707.
Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2014) Tracer v1.6. Available at: http://beast.bio.ed.ac.uk/Tracer (accessed 24 February 2014).
Reid, N.M. & Carstens, B.C. (2012) Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model. BMC Evolutionary Biology, 12, 196.
Ricklefs, R.E. (2004) Cladogenesis and morphological diversification in passerine birds. Nature, 430, 338-341.
Ros, R.M., Mazimpaka, V., Abou-Salama, U. et al. (2013) Mosses of the Mediterranean, an annotated checklist. Cryptogamie, Bryologie, 34, 99-283.
Rosindell, J. & Phillimore, A.B. (2011) A unified model of island biogeography sheds light on the zone of radiation. Ecology Letters, 14, 552-560.
Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology, 57, 758-771.
Stech, M., Sim-Sim, M., Esquível, M.G., Fontinha, S., Tangney, R., Lobo, C., Gabriel, R. & Quandt, D. (2008) Explaining the 'anomalous' distribution of Echinodium (Bryopsida: Echinodiaceae): independent evolution in Macaronesia and Australasia. Organisms Diversity and Evolution, 8, 282-292.
Sundberg, S. (2013) Spore rain in relation to regional sources and beyond. Ecography, 36, 364-373.
Talavera, M., Arista, M. & Ortiz, P.L. (2012) Evolution of dispersal traits in a biogeographical context: a study using the heterocarpic Rumex bucephalophorus as a model. Journal of Ecology, 100, 1194-1203.
Vanderpoorten, A., Laenen, B., Gabriel, R., González-Mancebo, J.M., Rumsey, F.J. & Carine, M.A. (2011) Dispersal, diversity and evolution of the Macaronesian cryptogamic floras. The biology of island floras (ed. by D. Bramwell and J. Caujapé-Castellls ), pp. 383-364. Cambridge University Press, Cambridge, UK.
Vanderpoorten, A., Patiño, J., Dirkse, G., Blockeel, T. & Hedenäs, L. (2015) Early divergence of an Azorean endemic species in the moss genus Rhynchostegiella (Brachytheciaceae). Phytotaxa, 210, 60-69.
Vargas, P. (2007) Are Macaronesian islands refugia of relict plant lineages?: a molecular survey. Phylogeography in southern European refugia: evolutionary perspectives on the origins and conservation of European biodiversity (ed. by S. Weiss and N. Ferrand ), pp. 297-314. Kluwer Academic Publishers, Dordrecht.
Wall, D.P. (2005) Origin and rapid diversification of a tropical moss. Evolution, 59, 1413-1424.
Weeks, B.C. & Claramunt, S. (2014) Dispersal has inhibited avian diversification in Australasian archipelagoes. Proceedings of the Royal Society B: Biological Sciences, 281, 20141257.
Whittaker, R.J. & Fernández-Palacios, J.M. (2007) Island biogeography: ecology, evolution, and conservation, 2nd edn. Oxford University Press, Oxford.
Yu, Y., Harris, A.J., Blair, C. & He, X. (2015) RASP (Reconstruct Ancestral State in Phylogenies): a tool for historical biogeography. Molecular Phylogenetics and Evolution, 87, 46-49.
Ziemmeck, F. & Harpel, J. (2014) CDF checklist of Galapagos mosses. Available at: http://www.darwinfoundation.org/datazone/checklists/bryophytes/musci/ (accessed 28 January 2014).
