Download

Full Text

• Dahl, J. A., Collas, P. A rapid micro chromatin immunoprecipitation assay (microChIP). Nature Protocols. 3, 1032-1045 (2008).
• Adli, M., Bernstein, B. E. Whole-genome chromatin profiling from limited numbers of cells using nano-ChIP-seq. Nature Protocols. 6, 1656-1668 (2011).
• Blecher-Gonen, R., et al. High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states. Nature Protocols. 8, 539-554 (2013).
• Aldridge, S., et al. AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation. Genome Biology. 14, 124(2013).
• Farias-Hesson, E., et al. Semi-automated library preparation for high-throughput DNA sequencing platforms. Journal of Biomedicin., & Biotechnology. 2010, (2010).
• Callejas, S., Alvarez, R., Benguria, A., Dopazo, A. AG-NGS: a powerful and user-friendly computing application for the semi-automated preparation of next-generation sequencing libraries using open liquid handling platforms. BioTechniques. 56, 28-35 (2014).
• Zang, C., et al. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics. 25, 1952-1958 Oxford, England (2009).
• Zhang, Y., et al. Model-based analysis of ChIP-Seq (MACS). Genome Biology. 9, 137(2008).
• Heinz, S., et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Molecular Cell. 38, 576-589 (2010).
• Quinlan, A. R., Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics (Oxford, England). 26, 841-842 (2010).
• Landt, S. G., et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research. 22, 1813-1831 (2012).