Genetic heterogeneity of bovine noroviruses in Italy

[en] By screening 104 faecal samples from asymptomatic calves in Italy, bovine norovirus RNA was detected with a prevalence rate of 10.5 % (11/104). A continuous sequence spanning the RdRp region and the 50 end of the capsid gene was generated for 7 of the 11 strains. Upon phylogenetic analysis, five strains were grouped with GIII.2 Newbury2-like viruses, and one strain was grouped with GIII.1 Jena-like noroviruses. Interestingly, one strain (80TE/IT) was genetically related to the GIII.1/Jena/80/De in the RdRp but resembled the GIII.2/Newbury2/76/UK in the capsid gene, suggesting a recombination event occurring in the ORF1/ORF2 junction region.

Disciplines :

Veterinary medicine & animal health

Author, co-author :

Di Martino, Barbara

Di Profio, Federica

Di Felice, Elisabetta

Melegari, Irene

Ceci, Chiara

Mauroy, Axel ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI) > Virologie vétérinaire et maladies virales animales

Thiry, Etienne ; Université de Liège - ULiège > Département des maladies infectieuses et parasitaires (DMI) > Virologie vétérinaire et maladies virales animales

Martella, Vito

Marsilio, Fulvio

Language :

English

Title :

Genetic heterogeneity of bovine noroviruses in Italy

Publication date :

2014

Journal title :

Archives of Virology

ISSN :

0304-8608

eISSN :

1432-8798

Publisher :

Springer Science & Business Media B.V.

Volume :

159

Pages :

2717-2722

Peer reviewed :

Peer Reviewed verified by ORBi

Available on ORBi :

since 20 June 2014

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Bibliography

Ambert-Balay K, Bon F, Le Guyader F, Pothier P, Kohli E (2005) Characterization of new recombinant noroviruses. J Clin Microbiol 43:5179–5186
Bridger JC, Hall GA, Brown JF (1984) Characterization of a calici-like virus (Newbury agent) found in association with astrovirus in bovine diarrhea. Infect Immun 43:133–138
Bull RA, Hansman GS, Clancy LE, Tanaka MM, Rawlinson WD, White PA (2005) Norovirus recombination in ORF1/ORF2 overlap. Emerg Infect Dis 11:1079–1085
Di Bartolo I, Ponterio E, Monini M, Ruggeri FM (2011) A pilot survey of bovine norovirus in northern Italy. Vet Rec 16:169–173
Glass RI, Noel J, Ando T, Fankhouser R, Belliot G, Mounts A, Parashar UD, Bresee JS, Monroe SS (2000) The epidemiology of enteric caliciviruses from humans: a reassessment using new diagnostics. J Infect Dis 181(Suppl 2):S254–S261
Green KY (2007) Caliciviridae: the noroviruses. In: Knipe DM, Howley PM (eds) Fields virology, 5th edn. Wolters Kluwer Health/Lippincott Williams and Wilkins, Philadelphia, pp 949–979
Günther H, Otto P, Heilmann P (1984) Diarrhea in young calves. Determination of the pathogenicity of a bovine coronavirus and an unidentified icosahedral virus. Arch Exp Veterinarmed 38:781–792
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment and analysis program for Windows 95/98/NT. Nucleic Acids Symp 41:95–98
Han MG, Smiley JR, Thomas C, Saif LJ (2004) Genetic recombination between two genotypes of genogroup III bovine noroviruses (BoNVs) and capsid sequence diversity among BoNVs and Nebraska-like bovine enteric caliciviruses. J Clin Microbiol 42:5214–5224
Hassine-Zaafrane M, Kaplon J, Sdiri-Loulizi K, Aouni Z, Pothier P, Aouni M, Ambert-Balay K (2012) Molecular prevalence of bovine noroviruses and neboviruses detected in central eastern Tunisia. Arch Virol 157:1599–1604
Huston AM, Atmar RL, Graham DY, Estes MK (2002) Norwalk virus infection and disease is associated with ABO histo-blood group type. J Infect Dis 185:1335–1337
Jor E, Myrmel M, Jonassen CM (2010) SYBR Green based real-time RT-PCR assay for detection and genotype prediction of bovine noroviruses and assessment of clinical significance in Norway. J Virol Methods 169:1–7
Jung K, Scheuer KA, Zhang Z, Wang Q, Saif LJ (2014) Pathogenesis of GIII.2 bovine norovirus, CV186-OH/00/US strain in gnotobiotic calves. Vet Microbiol 168:202–207
Kaplon J, Guenau E, Asdrubal P, Pothier P, Ambert-Balay K (2011) Possible novel nebovirus genotype in cattle, France. Emerg Infect Dis 17:1120–1123
Lindesmith L, Moe C, Marionneau S, Ruvoen N, Jiang X, Lindblad L, Stewart P, LePendu J, Baric R (2003) Human susceptibility and resistance to Norwalk virus infection. Nat Med 9:548–553
Liu BL, Lambden PR, Günther H, Otto P, Elschner M, Clarke IN (1999) Molecular characterization of a bovine enteric calicivirus: relationship to the Norwalk-like viruses. J Virol 73:819–825
Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152–160
Mauroy A, Scipioni A, Mathijs E, Saegerman C, Mast J, Bridger JC, Ziant D, Thys C, Thiry E (2009) Epidemiological study of bovine norovirus infection by RT-PCR and a VLP-based antibody ELISA. Vet Microbiol 137:243–251
Mauroy A, Scipioni A, Mathijs E, Thys C, Thiry E (2009) Molecular detection of kobuviruses and recombinant noroviruses in cattle in continental Europe. Arch Virol 154:1841–1845
Nayak MK, Balasubramanian G, Sahoo GC, Bhattacharya R, Vinje J, Kobayashi N, Sarkar MC, Bhattacharya MK, Krishnan T (2008) Detection of a novel intergenogroup recombinant Norovirus from Kolkata, India. Virology 377:117–123
Oliver SL, Asobayire E, Charpilienne A, Cohen J, Bridger JC (2007) Complete genomic characterization and antigenic relatedness of genogroup III, genotype 2 bovine noroviruses. Arch Virol 152:257–272
Oliver SL, Brown DW, Green J, Bridger JC (2004) A chimeric bovine enteric calicivirus: evidence for genomic recombination in genogroup III of the Norovirus genus of the Caliciviridae. Virology 326:231–239
Oliver SL, Dastjerdi AM, Wong S, El-Attar L, Gallimore C, Brown DW, Green J, Bridger JC (2003) Molecular characterization of bovine enteric caliciviruses: a distinct third genogroup of noroviruses (Norwalk-like viruses) unlikely to be of risk to humans. J Virol 77:2789–2798
Otto PH, Clarke IN, Lambden PR, Salim O, Reetz J, Liebler-Tenorio EM (2011) Infection of calves with bovine norovirus GIII.1 strain Jena virus: an experimental model to study the pathogenesis of norovirus infection. J Virol 85:12013–12021
Park SI, Jeong C, Kim HH, Park SH, Park SJ, Hyun BH, Yang DK, Kim SK, Kang MI, Cho KO (2007) Molecular epidemiology of bovine noroviruses in South Korea. Vet Microbiol 124:125–133
Reuter G, Pankovics P, Egyed L (2009) Detection of genotype 1 and 2 bovine noroviruses in Hungary. Vet Rec 165:537–538
Smiley JR, Hoet AE, Traven M, Tsunemitsu H, Saif LJ (2003) Reverse transcription-PCR assays for detection of bovine enteric caliciviruses (BEC) and analysis of the genetic relationships among BEC and human caliciviruses. J Clin Microbiol 41:3089–3099
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
van der Poel WH, van der Heide R, Verschoor F, Gelderblom H, Vinje J, Koopmans MP (2003) Epidemiology of Norwalk-like virus infections in cattle in The Netherlands. Vet Microbiol 92:297–309
Wise AG, Monroe SS, Hanson LE, Groomsc DL, Sockett D, Maesa RK (2004) Molecular characterization of noroviruses detected in diarrheic stools of Michigan and Wisconsin dairy calves: circulation of two distinct subgroups. Virus Res 100:165–177
Woode GN, Bridger JC (1978) Isolation of small viruses resembling astroviruses and caliciviruses from acute enteritis of calves. J Med Microbiol 11:441–452
Zheng DP, Ando T, Frankhouser RL, Beard RS, Glass RI, Monroe SS (2006) Norovirus classification and proposed strain nomenclature. Virology 346:31