Boonham N, Kreuze J, Winter S, et al. Methods in virus diagnostics: From ELISA to next generation sequencing. Vir Res 2014 ; 186 : 20-31.
Barba M, Czosnek H, Hadidi A. Historical perspective, development and applications of next-generation sequencing in plant virology. Viruses 2014 ; 6 : 106-36.
Massart S, Olmos A, Jijakli H, Candresse T. Current impact and future directions of high throughput sequencing in plant virus diagnostics. Vir Res 2014 ; 188 : 90-6.
Lecuit M, Eloit M. The diagnosis of infectious diseases by whole genome next generation sequencing: A new era is opening. Front Cell Infect Microbiol 2014 ; 4 : 25.
Cheval J, Sauvage V, Frangeul L, et al. Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples. J Clin Microbiol 2011 ; 49 : 3268-75.
Hagen C, Frizzi A, Gabriels S, et al. Accurate and sensitive diagnosis of geminiviruses through enrichment, high-throughput sequencing and automated sequence identification. Arch Virol 2012 ; 157 : 907-15.
Eloit M. Heurs et malheurs du séquençage à haut débit en virologie. Virologie 2014 ; 18 : 11-21.
Massart S, Brostaux Y, Barbarossa L, et al. Inter-laboratory evaluation of a duplex RT-PCR method using crude extracts for the simultaneous detection of Prune dwarf virus and Prunus necrotic ringspot virus. Eur J Plant Pathol 2008 ; 122 : 539-47.
Gorbalenya AE. Taxonomic proposals based on metagenomic and genome-only studies. ICTV Newsletter. [Newsletter]. 2014 ; 11.
Lecuit M, Eloit M. The human virome: new tools and concepts. Trends Microbiol 2013 ; 21 : 510-5.
MacDiarmid R, Rodoni B, Melcher U, Ochoa-Corona F, Roossinck M. Biosecurity implications of new technology and discovery in plant virus research. PLoS Pathog 2013 ; 9 : e1003337.
Vayssier-Taussat M, Albina E, et al. Shifting the paradigm from pathogens to pathobiome new concepts in the light of meta-omics. Front Cell Infect Microbiol 2014 ; 4 : 29.
