No full text
Poster (Scientific congresses and symposiums)
Identifying losses and expansions of selected gene families in incomplete genomic datasets
Di Franco, Arnaud; Hanikenne, Marc; Baurain, Denis
20138th Benelux Bioinformatics Conference
 

Files


Full Text
No document available.
Full Text Parts
BBC2013_poster_finalPolish.pdf
Author postprint (2.96 MB)
Download
BBC2013_abstract_final.pdf
Author postprint (184.17 kB)
Download

All documents in ORBi are protected by a user license.

Send to



Details



Keywords :
phylogeny; evolution; comparative genomics
Abstract :
[en] Plantae (Archaeplastida) are a natural group of organisms with plastids of primary endosymbiotic origin. Within this group, members of the red algae show evidence of a reduction of their genomic content. In this work, we designed a bioinformatics approach to investigate the few, sometimes incomplete, genomic datasets available for red algae, with the purpose of pointing out possible gene family losses and expansions. Our pipeline first populates a relational database with precomputed orthology relationships between green plant genomes and red algal datasets and then efficiently queries the database for computing statistics of losses and expansions for a series of gene families of interest.
Disciplines :
Life sciences: Multidisciplinary, general & others
Author, co-author :
Di Franco, Arnaud ;  Université de Liège - ULiège > Doct. sc. (bioch., biol. mol.&cell., bioinf.&mod.-Bologne)
Hanikenne, Marc  ;  Université de Liège - ULiège > Département des sciences de la vie > Génomique fonctionnelle et imagerie moléculaire végétale
Baurain, Denis  ;  Université de Liège - ULiège > Département des sciences de la vie > Phylogénomique des eucaryotes
Language :
English
Title :
Identifying losses and expansions of selected gene families in incomplete genomic datasets
Publication date :
09 December 2013
Event name :
8th Benelux Bioinformatics Conference
Event place :
Bruxelles, Belgium
Event date :
From 09-12-2013 to 10-12-2013
Audience :
International
Available on ORBi :
since 13 January 2014

Statistics


Number of views
56 (3 by ULiège)
Number of downloads
90 (2 by ULiège)

Bibliography


Similar publications



Contact ORBi