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See detailIdentification of a novel snake peptide displaying high affinity and antagonist behaviour for the alpha2-adrenoreceptors
Rouget, Céline; Quinton, Loïc ULg; Maïga, Arhamatoulaye et al

in British Journal of Pharmacology (2010), 161

Detailed reference viewed: 30 (5 ULg)
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See detailIdentification of a pharmacophore of SKCa channel blockers
Dilly, Sébastien ULg; Graulich, Amaury ULg; Farce, Amaury et al

in Journal of Enzyme Inhibition and Medicinal Chemistry (2005), 20(6), 517-523

Small conductance calcium-activated potassium channels ( SK) are widely expressed throughout the central nervous system ( CNS) and the periphery. Three subtypes of SK channels have so far been identified ... [more ▼]

Small conductance calcium-activated potassium channels ( SK) are widely expressed throughout the central nervous system ( CNS) and the periphery. Three subtypes of SK channels have so far been identified in different parts of the brain. Activation of the SK channels by a rise in intracellular calcium leads to the hyperpolarisation of the membrane, reducing cell excitability. Blocking the SK channels might be beneficial in the treatment of depression, Parkinson's disease and cognitive disorders. However, few blockers of SK channels have been characterized. In this study, a pharmacophoric model of SK channels blockers is presented. It is based on a series of nonpeptidic compounds and apamin, a peptidic blocker. To create the pharmacophore model, the conformational space of nonpeptidic blockers was investigated to generate a series of distance constraints applied to a simulated annealing study of apamin. The resulting conformation was superimposed with the nonpeptidic blockers to give a pharmacophore. [less ▲]

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See detailIdentification of a Time-varying Beam Using Hilbert Vibration Decomposition
Bertha, Mathieu ULg; Golinval, Jean-Claude ULg

in Proceedings of the International Modal Analysis Conference (IMAC) XXXII (2014, February)

The present work is concerned by modal identification of time-varying systems. For this purpose, a method based on instantaneous frequency identification and synchronous demodulation is used to extract ... [more ▼]

The present work is concerned by modal identification of time-varying systems. For this purpose, a method based on instantaneous frequency identification and synchronous demodulation is used to extract modal components from recorded signals. The proposed method of iterated sifting process is based on the Hilbert Vibration Decomposition (HVD) technique which is used to extract the instantaneous dominant vibrating component at each iteration. A source separation preprocessing step is introduced to treat multiple degree-of-freedom systems in an optimal way. Sources are used as reference signals to get a single instantaneous frequency of each mode for the demodulation on all the channels. The algorithm is presented and is applied to numerical simulation of a randomly excited time-varying structure for illustration purpose. The investigated structure is made up of a beam on which a non-negligible mass is traveling. The variable location of the mass results in changes in modal parameters. [less ▲]

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See detailIdentification of a universal VHH framework to graft non-canonical antigen-binding loops of camel single-domain antibodies
Saerens, Dirk; Pellis, Mireille; Loris, Remy et al

in Journal of Molecular Biology (2005), 352

Camel single-domain antibody fragments (VHHs) are promising tools in numerous biotechnological and medical applications. However, some conditions under which antibodies are used are so demanding that they ... [more ▼]

Camel single-domain antibody fragments (VHHs) are promising tools in numerous biotechnological and medical applications. However, some conditions under which antibodies are used are so demanding that they can be met by only the most robust VHHs. A universal framework offering the required properties for use in various applications (e.g. as intrabody, as probe in biosensors or on micro-arrays) is highly valuable and might be further implemented when employment of VHHs in human therapy is envisaged. We identified the VHH framework of cAbBCII10 as a potential candidate, useful for the exchange of antigen specificities by complementarity determining region (CDR) grafting. Due to the large number of CDRH loop structures present on VHHs, this grafting technique was expected to be rather unpredictable. Nonetheless, the plasticity of the cAbBCII10 framework allows successful transfer of antigen specificity from donor VHHs onto its scaffold. The cAbBCII10 was chosen essentially for its high level of stability (47 kJ/mol), good expression level (5 mg/l in E. coli) and its ability to be functional in the absence of the conserved disulfide bond. All five chimeras generated by grafting CDR-Hs, from donor VHHs belonging to subfamily 2 that encompass 75% of all antigen-specific VHHs, on the framework of cAbBCII10 were functional and generally had an increased thermodynamic stability. The grafting of CDR-H loops from VHHs belonging to other subfamilies resulted in chimeras of reduced antigen-binding capacity. [less ▲]

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See detailIdentification of accessible human cancer biomarkers using ex vivo chemical proteomic strategies
Kischel, Philippe ULg; Waltregny, David ULg; Castronovo, Vincenzo ULg

in Expert Review of Proteomics (2007), 4(6), 727-739

One promising avenue towards the development of more selective, better anticancer drugs lies in the targeted delivery of bioactive compounds to the tumor environment by means of binding molecules specific ... [more ▼]

One promising avenue towards the development of more selective, better anticancer drugs lies in the targeted delivery of bioactive compounds to the tumor environment by means of binding molecules specific for tumor-associated biomarkers. Eligibility of such markers for therapeutic ideally use three criteria: accessibility from the bloodstream; expression at sufficient level, and no (or much lower) expression in normal tissues. Most current discovery strategies (such as biomarker searching into body fluids) provide no clue as to whether proteins of interest are accessible, in human tissues, to suitable high-affinity ligands, such as systemically delivered monoclonal antibodies. To address this limitation, our group recently developed two methodologies based on chemical proteomic modifications, enabling the discovery of proteins accessible from the bloodstream and the extracellular space in human pathological tissues. In this review, we will discuss the potential benefits of these methodologies for the fast discovery of therapeutically valuable biomarkers. [less ▲]

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See detailIdentification of accessible proteins expressed in human breast cancer
Castronovo, Vincenzo ULg; Kischel, Philippe; Guillonneau, François et al

Scientific conference (2006)

Detailed reference viewed: 8 (0 ULg)
See detailIdentification of an unique Mycobacterium bovis strain in belgian cattle
Rigouts, L.; Desmecht, M.; Dufey, J. et al

Scientific conference (2001)

Detailed reference viewed: 6 (1 ULg)
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See detailIdentification of animals treated with bovine somatotropin : a new non-isotopic detection system for bST
Baronheid, Christophe; Bertozzi, Carlo; Renaville, Robert ULg et al

in Biotechnologie, Agronomie, Société et Environnement = Biotechnology, Agronomy, Society and Environment [=BASE] (2000), 4

Detailed reference viewed: 19 (0 ULg)
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See detailIdentification of animals treated with bovine somatotropin : a new non-isotopic detection system for BST
Baronheid, Christophe; Bertozzi, Carlo; Renaville, Robert ULg et al

in 1st Belgian Workshop on Animal Endocrinology (1999, October 13)

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See detailIdentification of animals treated with bovine somatotropin: a new non-isotopic detection system for BST.
Baronheid, C.; Bertozzi, C.; Renaville, Robert ULg et al

in Biotechnologie, Agronomie, Société et Environnement = Biotechnology, Agronomy, Society and Environment [=BASE] (2000), 4(1),

Detailed reference viewed: 6 (1 ULg)
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See detailIdentification of anionic selenium species in Se-rich yeast by electrospray QTOF MS/MS and hybrid linear ion trap/orbitrap MSn
Dernovics, M.; Far, Johann ULg; Lobinski, R.

in Metallomics (2009), 1(4), 317-329

An analytical approach allowing the identification Of unknown selenium metabolites ill selenium-rich yeast was described. Anion-exchange HPLC of the Se-metabolome fraction co-eluting with salts ill size ... [more ▼]

An analytical approach allowing the identification Of unknown selenium metabolites ill selenium-rich yeast was described. Anion-exchange HPLC of the Se-metabolome fraction co-eluting with salts ill size-exclusion chromatography allowed the separation of nine selenium species (excluding isomers and selenate) as monitored by inductively Coupled plasma mass spectrometry (ICP MS). The individual fractions were analyzed by electrospray QTOF MS/MS and hybrid linear ion trap/Orbitrap MSn after sample introduction by reversed-phase nanoHPLC and by hydrophilic interaction LC (HILIC), respectively. Out of the nine detected species. eight were identified oil the basis of accurate mass measurements and collision induced dissociation/fragmentation information. Seven Se-species (selenohomolanthionine, gamma-Glu-selenocystathionine, 2,3-DHP-selenocystathionine, N-acetyl-selenocystathionine, 2,3-DHP-selenohomolanthionine Se-methyl-selenoglutathione, and 2,3-DHP-Se-methylselenocysteine) were reported for the first time in Se-rich yeast. five of them have never been reported in any biological sample before. [less ▲]

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See detailIdentification of antigens recognized in the developing mouse brain by the RC2 antibody, a marker of radial glia
Leprince, Pierre ULg; Chanas-Sacre, G.; Wattiez, R. et al

in International Journal of Developmental Neuroscience (1996), 14(Sup. 1), 84

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See detailIdentification of aphid salivary proteins: a proteomic investigation of Myzus persicae.
Harmel, Nicolas ULg; Letocart, E.; Cherqui, A. et al

in Insect Molecular Biology (2008), 17(2), 165-74

The role of insect saliva in the first contact between an insect and a plant is crucial during feeding. Some elicitors, particularly in insect regurgitants, have been identified as inducing plant defence ... [more ▼]

The role of insect saliva in the first contact between an insect and a plant is crucial during feeding. Some elicitors, particularly in insect regurgitants, have been identified as inducing plant defence reactions. Here, we focused on the salivary proteome of the green peach aphid, Myzus persicae. Proteins were either directly in-solution digested or were separated by 2D SDS-PAGE before trypsin digestion. Resulting peptides were then identified by mass spectrometry coupled with database investigations. A homemade database was constituted of expressed sequence tags from the pea aphid Acyrtosiphon pisum and M. persicae. The databases were used to identify proteins related to M. persicae with a nonsequenced genome. This procedure enabled us to discover glucose oxidase, glucose dehydrogenase, NADH dehydrogenase, alpha-glucosidase and alpha-amylase in M. persicae saliva. The presence of these enzymes is discussed in terms of plant-aphid interactions. [less ▲]

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See detailIdentification of asthma-related trans-acting epistatic eQTLs using Model-Based Multifactor Dimensionality Reduction (MB-MDR)
Bessonov, Kyrylo ULg

Poster (2013, October 22)

Epistasis is likely to underlie most complex traits, including gene expression, yet it is very difficult to detect using standard approaches. SNPs located inside a gene coding region or in its vicinity (i ... [more ▼]

Epistasis is likely to underlie most complex traits, including gene expression, yet it is very difficult to detect using standard approaches. SNPs located inside a gene coding region or in its vicinity (i.e. ≤2 Mb from each 5’ and 3’ side) can influence the corresponding gene expression levels. These expression quantitative trait loci (eQTLs) are referred to as cisSNPs. In contrast, eQTLs that are outside the aforementioned gene range can also influence the gene’s expression, in which case, they are called transSNPS to that gene. In this study we considered significant cisSNPs previously identified via generalized least squares (GLS) regression modeling. We then identified those genes transcripts whose expression is regulated by cis/transSNP interaction. In this work we aimed at identifying transcripts whose expression is regulated by a cis/transSNP interactions using Model-Based Multifactor Dimensionality Reduction (MB-MDR) [2]. This model-free approach to detect trans-epistasis involves reducing a high-dimensional GxG space to GxG factor levels that either exhibit high evidence, low evidence or no evidence at all for their association to gene expression levels of interest. Our protocol was applied on real-life data from the childhood asthma management program (CAMP) [1]. It involved coupling a traditional a priori eQTL search to an a posteriori trans-epistasis analysis to identify genetic modifiers to statistically significant cisSNPs. Such an approach allows to reveal previously unreported inter-dependencies that may be important in understanding of biological mechanisms underlying human complex diseases such as asthma. The proposed protocol identified a large number trans-epistasis gene-gene effects of eQTLs. [less ▲]

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See detailIdentification of bacteria community associated with earthworm gut
Lemtiri, Aboulkacem ULg; Alabi, Taofic; Bodson, Bernard ULg et al

Poster (2012, July 26)

The role of earthworms in soil fertility and transformation of organic waste was regulary cited to be of first importance. Associated to these macro-invertebrates, a large diversity of micro-orgnisms are ... [more ▼]

The role of earthworms in soil fertility and transformation of organic waste was regulary cited to be of first importance. Associated to these macro-invertebrates, a large diversity of micro-orgnisms are found indirectly in their closed environment or directly in their gut. Functional aspects of these interactions and symbiosis in relation with soil characteristics and fertility rates are poorly developed. Here, the micro-organisms diversity and potential related functions of earthworm gut were investigated using a proteiomic approach for both protein and micro-organism identifications. Microbial community investigation was detected by proteomic approach based on bidimensional electrophoresis coupled with mass spectrometry using Matrix Assisted Laser Desorption Ionisation – time of flight (Maldi-Tof). Diversity of gut associated bacterial communities was discussed. Indeed, application of particular crop production practices such as crop residue management at the field level could regulate the gut bacterial communities in earthworm but also microbials in soils. Agricultural systems had to consider the microbial and associated organisms in the soil to enhance fertlility and crop production in sustainable ways. [less ▲]

Detailed reference viewed: 45 (13 ULg)