References of "Kerkhofs, Johan"
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See detailCongenital pseudarthrosis of the tibia: a mathematical approach
Van Schepdael, An; Carlier, Aurélie ULg; Ashbourn, Joanna et al

Conference (2013, September 13)

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See detailA Dynamic Graph Model of Endochondral Ossification can assess the Importance of Biological Actors in Differentiation
Kerkhofs, Johan ULg; Van Oosterwyck, Hans; Geris, Liesbet ULg

Conference (2012, September 18)

Cell-based tissue engineering constructs are a promising avenue for the treatment of long bone defects since they provide the primordial ingredients for bone regeneration. The construct provides the ... [more ▼]

Cell-based tissue engineering constructs are a promising avenue for the treatment of long bone defects since they provide the primordial ingredients for bone regeneration. The construct provides the appropriate micro-environment through the carrier, cells to form tissue and chemical cues to kick start the natural bone forming process. Clearly this approach will benefit from a more comprehensive appreciation of how cell populations and the microenvironment provided by the carrier can impact on bone formation in all its complexities. A cornucopia of studies of developmental biology have revealed many biological actors that together form a central network that orchestrates cell behaviour during this process and assures its robustness. This knowledge can be brought to bear specifically in the form of a mathematical model of endochondral ossification, the dominant type of ossification. This model can facilitate the understanding of how growth factors and transcription factors influence cell fate decisions and consequently answer the question whether they can boost bone healing. The model formalism accommodates the qualitative information that is typically available in developmental studies. The network comprises 46 nodes and 161 interactions, shown to be important in endochondral ossification. To simulate network dynamics in discrete time the normalized value of each gene is determined by additive functions where all interactions are assumed to be equally powerful. Furthermore, each species is represented by a fast variable (activity level, as determined by post translation modifications) which is assumed to be in equilibrium with a slow variable (mRNA) at all times. Through a Monte Carlo approach the importance of each node in the stability of chondrocytic phenotypes (proliferating, hypertrophic) is assessed. The hypertrophic state, driven by Runx2, is more stable than the proliferating chondrocyte. This higher stability seems to be conferred by faster reactions that favor the hypertrophic phenotype. In addition, the results point out that some transcription factors are necessary for the induction of a certain phenotype, whereas other transcription factors are required to maintain the phenotype, but are not necessary capable of inducing it. Overall, the model allows the importance of several important factors in the fate decision of mesenchymal cells to be quantitatively assessed based mainly on topological information. [less ▲]

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See detailBridging the Gap: A Theoretical Model of Mechanotransduction Through ERK Signalling
Kerkhofs, Johan ULg; Geris, Liesbet ULg; Bosmans, Bart et al

Conference (2012, July 02)

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See detailRelating the Chondrocyte Gene Network to Growth Plate Morphology: From Genes to Phenotype
Kerkhofs, Johan ULg; Roberts, Scott J; Luyten, Frank P et al

in PLoS ONE (2012)

During endochondral ossification, chondrocyte growth and differentiation is controlled by many local signalling pathways. Due to crosstalks and feedback mechanisms, these interwoven pathways display a ... [more ▼]

During endochondral ossification, chondrocyte growth and differentiation is controlled by many local signalling pathways. Due to crosstalks and feedback mechanisms, these interwoven pathways display a network like structure. In this study, a large-scale literature based logical model of the growth plate network was developed. The network is able to capture the different states (resting, proliferating and hypertrophic) that chondrocytes go through as they progress within the growth plate. In a first corroboration step, the effect of mutations in various signalling pathways of the growth plate network was investigated. [less ▲]

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See detailCoupling Cell Mechanics and Intracellular Signalling: Mechanotransduction through ERK
Kerkhofs, Johan ULg; Geris, Liesbet ULg; Bosmans, Bart et al

in Middleton, John (Ed.) The Proceedings of the 10th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering. Hotel Berlin, Berlin, Germany, April 7th – 11th, 2012 pages:0-0 (2012, April 12)

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See detailA Boolean network approach to developmental engineering
Kerkhofs, Johan ULg; Roberst, Scott J; Luyten, Frank P et al

Conference (2011, June 13)

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See detailA Boolean network model of the growth plate
Kerkhofs, Johan ULg; Roberts, Scott J; Luyten, Frank P et al

Poster (2010, November 26)

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See detailA Boolean network model of the growth plate
Kerkhofs, Johan ULg; Roberts, Scott J; Luyten, Frank P et al

Poster (2010, October 10)

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See detailBMP signalling in growth plate chondrocytes: a Boolean modelling approach
Kerkhofs, Johan ULg; Roberts, Scott J; Van Oosterwyck, Hans et al

Poster (2010, September 15)

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