References of "Hanikenne, Marc"
     in
Bookmark and Share    
Peer Reviewed
See detailComplex regulation of the FRD3 gene in Arabidopsis relatives
Charlier, Jean Benoit; Polese, Catherine ULg; Nouet, Cécile ULg et al

Poster (2014, March 31)

Detailed reference viewed: 12 (1 ULg)
See detailEpigenetics and local adaptation
Hanikenne, Marc ULg

Conference (2014, January 22)

Detailed reference viewed: 10 (1 ULg)
Full Text
Peer Reviewed
See detailOrigin and evolution of metal P-type ATPases in Plantae (Archaeplastida)
Hanikenne, Marc ULg; Baurain, Denis ULg

in Frontiers in Plant Science (2014), 4

Metal ATPases are a subfamily of P-type ATPases involved in the transport of metal cations across biological membranes. They all share an architecture featuring eight transmembrane domains in pairs of two ... [more ▼]

Metal ATPases are a subfamily of P-type ATPases involved in the transport of metal cations across biological membranes. They all share an architecture featuring eight transmembrane domains in pairs of two and are found in prokaryotes as well as in a variety of Eukaryotes. In Arabidopsis thaliana, eight metal P-type ATPases have been described, four being specific to copper transport and four displaying a broader metal specificity, including zinc, cadmium and possibly copper and calcium. So far, few efforts have been devoted to elucidating the origin and evolution of these proteins in Eukaryotes. In this work, we use large-scale phylogenetics to show that metal P-type ATPases form a homogenous group among P-type ATPases and that their specialisation into either monovalent (Cu) or divalent (Zn, Cd…) metal transport stems from a gene duplication that took place early in the evolution of Life. Then, we demonstrate that the four subgroups of plant metal ATPases all have a different evolutionary origin and a specific taxonomic distribution, only one tracing back to the cyanobacterial progenitor of the chloroplast. Finally, we examine the subsequent evolution of these proteins in green plants and conclude that the genes thoroughly characterised in model organisms are often the result of lineage-specific gene duplications, which calls for caution when attempting to infer function from sequence similarity alone in non-model organisms. [less ▲]

Detailed reference viewed: 32 (11 ULg)
Full Text
See detailIdentifying losses and expansions of selected gene families in incomplete genomic datasets
Di Franco, Arnaud ULg; Hanikenne, Marc ULg; Baurain, Denis ULg

Poster (2013, December 09)

Plantae (Archaeplastida) are a natural group of organisms with plastids of primary endosymbiotic origin. Within this group, members of the red algae show evidence of a reduction of their genomic content ... [more ▼]

Plantae (Archaeplastida) are a natural group of organisms with plastids of primary endosymbiotic origin. Within this group, members of the red algae show evidence of a reduction of their genomic content. In this work, we designed a bioinformatics approach to investigate the few, sometimes incomplete, genomic datasets available for red algae, with the purpose of pointing out possible gene family losses and expansions. Our pipeline first populates a relational database with precomputed orthology relationships between green plant genomes and red algal datasets and then efficiently queries the database for computing statistics of losses and expansions for a series of gene families of interest. [less ▲]

Detailed reference viewed: 16 (1 ULg)
Full Text
See detailComplex regulation of the FRD3 gene in Arabidopsis relatives
Charlier, Jean-Benoit ULg; Polese, Catherine ULg; Nouet, Cécile ULg et al

Poster (2013, February 26)

Detailed reference viewed: 34 (12 ULg)
Full Text
Peer Reviewed
See detailA more complete picture of metal hyperaccumulation through next-generation sequencing technologies
Verbruggen, Nathalie; Hanikenne, Marc ULg; Clemens, Stephan

in Frontiers in Plant Science (2013), 4

Detailed reference viewed: 23 (0 ULg)
Full Text
Peer Reviewed
See detailHard Selective Sweep and Ectopic Gene Conversion in a Gene Cluster Affording Environmental Adaptation
Hanikenne, Marc ULg; Kroymann, Juergen; Trampczynska, Aleksandra et al

in PLoS Genetics (2013), 9

Detailed reference viewed: 23 (4 ULg)
See detailZinc hyperaccumulation: a model to examine metal homeostasis in plants
Hanikenne, Marc ULg

Scientific conference (2012, December 05)

Detailed reference viewed: 44 (2 ULg)
See detailZinc hyperaccumulation: a model to examine metal homeostasis in plants
Hanikenne, Marc ULg

Scientific conference (2012, September 28)

Detailed reference viewed: 23 (2 ULg)
Full Text
See detailPromoter analysis of three HMA4 gene copies in the zinc hyperaccumulator Arabidopsis halleri
Nouet, Cécile ULg; Cebula, Justyna; Motte, Patrick ULg et al

Poster (2012, September 20)

Detailed reference viewed: 66 (3 ULg)
See detailZinc hyperaccumulation: a model to examine metal homeostasis in plants
Hanikenne, Marc ULg; Nouet, Cécile ULg; Charlier, Jean-Benoit et al

Conference (2012, September 20)

The plant Arabidopsis halleri exhibits naturally selected metal hypertolerance and extraordinarily high levels of leaf metal accumulation. Metal hyperaccumulator species attract interest as they represent ... [more ▼]

The plant Arabidopsis halleri exhibits naturally selected metal hypertolerance and extraordinarily high levels of leaf metal accumulation. Metal hyperaccumulator species attract interest as they represent an extreme end of natural variation of the metal homeostasis network. This might be useful to reveal the global functioning of metal homeostasis networks and uncover key nodes whose alterations can drastically modify metal accumulation and tolerance. In addition, metal hyperaccumulation is a compelling model to study adaptation. In the last few years, major progress has been achieved in our understanding of the mechanisms underlying metal hyperaccumulation in A. halleri. High rates of metal uptake by roots, root-to-shoot translocation and efficient shoot vacuolar sequestration play central roles in determining hyperaccumulation and hypertolerance. Enhanced functions of several metal transporter-encoding genes result from gene copy number amplification and/or (cis)-regulatory changes. We will describe the function of several transporters in zinc and cadmium hyperaccumulation and hypertolerance, and in the adjustment of nutrient homeostasis in A. halleri. Recent work aiming to determine if selection acted during the evolutionary history of A. halleri on a loci required for metal tolerance and accumulation will be presented. [less ▲]

Detailed reference viewed: 128 (2 ULg)
Full Text
See detailFunctional study of Arabidopsis thaliana ASF/SF2-like pre-mRNA SR splicing factors
Stankovic, Nancy ULg; Tillemans, Vinciane; Leponce, Isabelle et al

Poster (2012, July 04)

Detailed reference viewed: 36 (2 ULg)