References of "Fickers, Patrick"
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See detailPhenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law
Baert, Jonathan ULg; Kinet, Romain ULg; Brognaux, Alison ULg et al

in Biotechnology Journal (in press)

Noise in gene and protein expression is a major cause for bioprocess deviation. However, this phenomenon has been only scarcely considered in real bioprocessing conditions. In this work, a scaling-law ... [more ▼]

Noise in gene and protein expression is a major cause for bioprocess deviation. However, this phenomenon has been only scarcely considered in real bioprocessing conditions. In this work, a scaling-law derived from a genome-scale studies based on GFP reporter systems has been calibrated to an on-line flow cytometry device, allowing thus to get an insight at the level of promoter activity and associated noise during a whole microbial culture carried out in bioreactor. We show that most of the GFP reporter systems investigated and thus corresponding genes could be included inside the area covered by the scaling-law. The experimental results suggest that this scaling-law could be used to predict the dynamics of promoter activity, as well as the associated noise, in bioprocessing conditions. The knowledge acquired throughout this work could be used for the design of more robust expression systems. [less ▲]

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See detailInfluence of methanol/sorbitol co-feeding rate on pAOX1 induction in a Pichia pastoris Mut+ strain in bioreactor with limited oxygen transfer rate.
Carly, F.; Niu, H.; Delvigne, Frank ULg et al

in Journal of industrial microbiology & biotechnology (2016), 43(4), 517-23

High Pichia pastoris biomass density could be obtained using high co-feeding rate of methanol and sorbitol in a fed-batch or continuous culture, while further higher feeding rate finally leads to oxygen ... [more ▼]

High Pichia pastoris biomass density could be obtained using high co-feeding rate of methanol and sorbitol in a fed-batch or continuous culture, while further higher feeding rate finally leads to oxygen limitation in bioreactor. In the literature, there is lack of report about AOX1 promoter regulation with regard to dissolved oxygen level (DO). Therefore, in this work, chemostat cultures were performed to investigate the cell growth, metabolism and regulation of the AOX1 promoter (pAOX1) regarding co-feeding rate of optimized methanol/sorbitol mixture (methanol fraction 0.60 C-mol/C-mol) using a P. pastoris Mut+/pAOX1-lacZ strain. The oxygen transfer rates (OTR) in bioreactor were kept in the range of typical values of large bioreactor, i.e., 4-8 g/(L h) if DO equals 30 % saturation or 5-10 g/(L h) if DO nears zero. For DO >0, an increase of the carbon fed led to an increase of pAOX1 induction. By contrast, when dissolved oxygen was completely depleted, methanol accumulated, causing a 30 % decrease of pAOX1 induction. However, this decrease is more likely to be lined to methanol accumulation than to low level of dissolved oxygen (<4 % DO). Methanol/sorbitol co-feeding allowed cells to adapt to oxygen transient limitations that often occur at industrial scale with reduced effect on pAOX1 induction. The optimal feeding rate tested here was 6.6 mmol C (DCW h)(-1) at an OTR of 8.28 g O2(L h)(-1) with over fivefold pAOX1 induction (probably directly associated with target protein productivity) compared with previous work. [less ▲]

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See detailOpportunités pour la valorisation des végétaux riches en anthocyanes comme sources de colorants alimentaires (synthèse bibliographique)
Beye, Cheikh ULg; Tounkara, Lat Souk; Seck, Mamadou Amadou et al

in Biotechnologie, Agronomie, Société et Environnement = Biotechnology, Agronomy, Society and Environment [=BASE] (2015), 19(4), 392-401

Introduction. Très répandues dans le règne végétal, les anthocyanes sont le sujet d’un grand nombre d’études qui abordent en général les aspects concernant leur instabilité vis-à-vis des conditions dans ... [more ▼]

Introduction. Très répandues dans le règne végétal, les anthocyanes sont le sujet d’un grand nombre d’études qui abordent en général les aspects concernant leur instabilité vis-à-vis des conditions dans lesquelles elles sont employées ou l’effet bénéfique de leur consommation sur la santé. Littérature. Ces aspects sont particulièrement importants lorsqu’on envisage de les extraire en vue de leur utilisation comme colorant alimentaire naturel. Dans cette revue bibliographique, les propriétés des anthocyanes susceptibles d’être altérées lors de leur transformation ont été étudiées. Par la suite, un état des lieux sur les méthodes de fabrication de colorants à base d’anthocyanes a été fait afin de dégager des perspectives pour l’exploitation des matières végétales qui en contiennent de grandes quantités. Conclusions. Les fruits et légumes utilisables pour la fabrication de colorants alimentaires sont nombreux et variés. Les différences au niveau du contenu ont une influence sur la stabilité de la couleur des extraits, mais les progrès récents en matière de formulation ouvrent des perspectives pour la valorisation des végétaux riches en anthocyanes. [less ▲]

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See detailFungal lipase production by solid-state fermentation
Ramos-Sanchez, L.B.; Julian-Ricardo, M.C.; Cordova, J. et al

Conference (2014, December)

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See detailBacillus as a source of novel antibiotics
Fickers, Patrick ULg

Conference (2014, November)

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See detailPropuesta de estrategia para la producción de biocombustibles de biomasa lignocelulósica
Ramos-Sanchez, L.B.; Cujilema-Quitio, M.C.; Leon-Revelo, G. et al

Conference (2014, November)

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See detailOptimization of pAOX1 induction in a methanol/sorbitol co-feeding process in Pichia pastoris
Carly, F.; Niu, H.; Fickers, Patrick ULg

Conference (2014, October)

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See detailAccumulation lipidique par Yarrowia lipolytica: un nouvel outil d'observation
Bouchedja, Doria Naïla; Delvigne, Frank ULg; Boudjellal, Abdelghani et al

Conference (2014, April 06)

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See detailAntibiotic compounds from Bacillus: why are they so amazing?
Fickers, Patrick ULg

Conference (2014, April)

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See detailPichia pastoris: a workhorse for recombinant protein production
Fickers, Patrick ULg

in Current Research in Microbiology and Biotechnology (2014), (2), 354-363

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See detailMacroscopic modelling of baker’s yeast production in fed-batch cultures and its link with trehalose production
Richelle, A.; Fickers, Patrick ULg; Bogaerts, Ph

in Computers & Chemical Engineering (2014), (61), 220-233

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See detailSynthesis and biological evaluation of potential threonine synthase inhibitors: Rhizocticin A and Plumbemycin A
Gahungu; Arguelles Arias, Anthony ULg; Fickers, Patrick ULg et al

in Bioorganic & Medicinal Chemistry (2013), 21

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See detailISOLATION OF THE ANTIMICROBIAL CYCLIC PEPTIDE SUBTILOSIN A FROM A GUT-ASSOCIATED BACILLUS SUBTILIS STRAIN
Schyns, Ghislain; Serra, Claudia; Henriques, Adriano et al

in American Journal of Biochemistry & Biotechnology (2013), 9(3),

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See detailAntimicrobial Activity of Bacillus amyloliquefaciens ANT1 Toward Pathogenic Bacteria and Mold: Effects on Biofilm Formation
Arguelles Arias, Anthony ULg; Nastro, Rosa Anna; Ongena, Marc ULg et al

in Probiotics and Antimicrobial Proteins (2013)

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See detailThe amylolysin from Bacillus amyloliquefaciens GA1
Fickers, Patrick ULg

Conference (2013, June)

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See detailCharacterization of amylolysin, a novel lantibiotic from Bacillus amyloliquefaciens GA1
Arguelles Arias, Anthony ULg; Ongena, Marc ULg; Devreese, Bart et al

in PLoS ONE (2013), 8(12),

Background: Lantibiotics are heat-stable peptides characterized by the presence of thioether amino acid lanthionine and methyllanthionine. They are capable to inhibit the growth of Gram-positive bacteria ... [more ▼]

Background: Lantibiotics are heat-stable peptides characterized by the presence of thioether amino acid lanthionine and methyllanthionine. They are capable to inhibit the growth of Gram-positive bacteria, including Listeria monocytogenes, Staphylococcus aureus or Bacillus cereus, the causative agents of food-borne diseases or nosocomial infections. Lantibiotic biosynthetic machinery is encoded by gene cluster composed by a structural gene that codes for a pre-lantibiotic peptide and other genes involved in pre-lantibiotic modifications, regulation, export and immunity. Methodology/Findings: Bacillus amyloliquefaciens GA1 was found to produce an antimicrobial peptide, named amylolysin, active on an array of Gram-positive bacteria, including methicillin resistant S. aureus. Genome characterization led to the identification of a putative lantibiotic gene cluster that comprises a structural gene (amlA) and genes involved in modification (amlM), transport (amlT), regulation (amlKR) and immunity (amlFE). Disruption of amlA led to loss of biological activity, confirming thus that the identified gene cluster is related to amylolysin synthesis. MALDI-TOF and LC-MS analysis on purified amylolysin demonstrated that this latter corresponds to a novel lantibiotic not described to date. The ability of amylolysin to interact in vitro with the lipid II, the carrier of peptidoglycan monomers across the cytoplasmic membrane and the presence of a unique modification gene suggest that the identified peptide belongs to the group B lantibiotic. Amylolysin immunity seems to be driven by only two AmlF and AmlE proteins, which is uncommon within the Bacillus genus. Conclusion/Significance: Apart from mersacidin produced by Bacillus amyloliquefaciens strains Y2 and HIL Y-85,544728, reports on the synthesis of type B-lantibiotic in this species are scarce. This study reports on a genetic and structural characterization of another representative of the type B lantibiotic in B. amyloliquefaciens. Copyright: © 2013 Arguelles Arias et al. [less ▲]

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