The magic gold cluster AU(20)Kryachko, Eugène ; Remacle, Françoise ![]() in International Journal of Quantum Chemistry (2007), 107(14), 2922-2934 The 20-nanogold cluster Au-20 exhibits a large variety of two- and three-dimensional isomeric forms. Among them is the ground-state isomer Au-20(T-d) representing the stable cluster with a unique ... [more ▼] The 20-nanogold cluster Au-20 exhibits a large variety of two- and three-dimensional isomeric forms. Among them is the ground-state isomer Au-20(T-d) representing the stable cluster with a unique tetrahedral shape, with all atoms on the surface, and large HOMO-LUMO gap which even slightly exceeds that of the buckyball fullerene C-60. The anionic cluster Au-20(-) (T-d) that holds its parent tetrahedral symmetry features a high catalytic activity. The list of the properties of the 20-nanogold clusters surveyed in the present work ranges from the energetic order of stability of its isomers to the optical absorption and excitation spectra of the Au-20(T-d) cluster. We also report the structures and properties of its doubly charged clusters Au-20(2+) and Au-20(2-) and computationally confirm that Au-20 is indeed stable. The zero-point-energy-corrected adiabatic second electron affinity of Au-20(T-d) amounts to 0.43-0.53 eV that is consistent with the experimental data. In addition, we provide computational evidence of the existence of the novel, hollow cage isomer of Au-20 and analyze its key properties. (C) 2007 Wiley Periodicals, Inc. [less ▲] Detailed reference viewed: 22 (1 ULg) Transcending binary logic by gating three coupled quantum dots; ; Remacle, Françoise et alin Nano Letters (2007), 7 Physical considerations supported by numerical solution of the quantum dynamics including electron repulsion show that three weakly coupled quantum dots can robustly execute a complete set of logic gates ... [more ▼] Physical considerations supported by numerical solution of the quantum dynamics including electron repulsion show that three weakly coupled quantum dots can robustly execute a complete set of logic gates for computing using three valued inputs and outputs. Input is coded as gating (up, unchanged, or down) of the terminal dots. A nanosecond time scale switching of the gate voltage requires careful numerical propagation of the dynamics. Readout is the charge (0, 1, or 2 electrons) on the central dot. [less ▲] Detailed reference viewed: 9 (2 ULg) Towards parallel computing: representation of a linear finite state digital logic machine by a molecular relaxation processRemacle, Françoise ; in European Physical Journal D -- Atoms, Molecules, Clusters & Optical Physics (2007), 42(1), 49-59 A chemical system displaced not far from equilibrium is shown to offer a physical realization of a linear sequential digital logic machine. The requirement from the system is that its state is described ... [more ▼] A chemical system displaced not far from equilibrium is shown to offer a physical realization of a linear sequential digital logic machine. The requirement from the system is that its state is described by giving the current values of the concentration of different chemical species. The time evolution is therefore described by a classical master equation. The Landau-Teller process of vibrational relaxation of diatomic molecules in a buffer gas is used as a concrete example where each vibrational level is taken to be a distinct species. The probabilities (= fractional concentrations) of the species of the physicochemical system are transcribed as words composed of letters from a finite alphabet. The essential difference between the finite precision of the logic machine and the seemingly unbounded number of significant figures that could be used to specify a concentration is emphasized. The transcription between the two is made by using modular arithmetic that is, is the arithmetic of congruence. A digital machine corresponding to the vibrational relaxation process is constructed explicitly for the simple case of three vibrational levels. In this exploratory effort we use words of only one letter. Even this is sufficient to achieve an exponentially large number of memory states. [less ▲] Detailed reference viewed: 5 (2 ULg) Charge distribution in 3'-deoxythymidine-fullerene: Mass spectrometry, laser excitation, and computational studiesGreisch, Jean-François ; ; De Pauw, Edwin et alin Israel Journal of Chemistry (2007), 47(1), 25-35 Electrospray ionization of the donor-spacer-acceptor model system 3'-imino[60]fulleryl-3'-deoxythymidine molecule (FdT) produces deprotonated negatively charged species (dFdT). In this paper, we ... [more ▼] Electrospray ionization of the donor-spacer-acceptor model system 3'-imino[60]fulleryl-3'-deoxythymidine molecule (FdT) produces deprotonated negatively charged species (dFdT). In this paper, we investigate where the negative charge is localized and whether its location can be manipulated. The fragmentation of dFdT is studied experimentally by mass spectrometry using both collisional and photoactivation. Besides fragmentation, photoexcitation of anions stored in an ion trap leads to electron photodetachment. The competition between the two channels is studied as a function of the excitation wavelength. Starting from the neutral parents, two families of dFdT molecules are computationally identified. Deprotonation takes place on the 3'-deoxythymidine (dT) subunit, either on the thymine at N3 or on the deoxyribose residue at O5'. Deprotonation in N3 leads to negatively charged molecules with an extended geometry and the excess charge largely localized on the dT. The O5'-deprotonation leads to lower-energy folded conformers stabilized by an additional bond (C-O or C-H) with the nearby C-60-N acceptor part, and the negative charge is mostly localized on the fullerene. The calculated electron detachment energies are higher for the extended N3dFdT conformers than for the O5'dFdT ones. Multiphoton photodetachment experiments at 1064 nm indicate the negative charge to be on the C-60 unit. No indication for a photoinduced charge transfer was found. In MS beside the C-60 anion a C60NH, - fragment is observed, which implies a double intramolecular H transfer. The computed energy of the corresponding dFdT, stabilized by two H-C-60 bonds, is intermediate between N3 and O5' deprotonated molecules. [less ▲] Detailed reference viewed: 15 (2 ULg) The gold-ammonia bonding patterns of neutral and charged complexes Au m 0+/-1-(NH3)n. I. Bonding and charge alternation.Kryachko, Eugène ; Remacle, Françoise ![]() in Journal of Chemical Physics (2007), 127(19), 194305 The gold-ammonia bonding patterns of the complexes which are formed between the ammonia clusters (NH/sub 3/)/sub 1<or=n<or=3/ and gold clusters of different sizes that range from one gold atom to the tri ... [more ▼] The gold-ammonia bonding patterns of the complexes which are formed between the ammonia clusters (NH/sub 3/)/sub 1<or=n<or=3/ and gold clusters of different sizes that range from one gold atom to the tri-, tetra-, and 20-nanogold clusters are governed by two basic and fundamentally different ingredients: the anchoring Au-N bond and the nonconventional N-H ... Au hydrogen bond. The latter resembles, by all features, a conventional hydrogen bond and is formed between a typical conventional proton donor N-H group and the gold cluster that behaves as a nonconventional proton acceptor. We provide strong computational evidence that the gold-ammonia bonding patterns exhibit distinct characteristics as the Z charge state of the gold cluster varies within Z=0,+/-1. The analysis of these bonding patterns and their effects on the N-H ... N H-bonded ammonia clusters are the subject of this paper. [less ▲] Detailed reference viewed: 19 (3 ULg) Time-resolved electrochemical spectroscopy of charge migration in molecular wires: Computational evidence for rich electronic dynamicsRemacle, Françoise ; in Journal Of Physical Chemistry c (2007), 111(5), 2301-2309 Electrical conduction through a molecule tethered by thiol bridges between two gold clusters is examined from a time-dependent point of view. The shortest electronic time scale for charge migration is a ... [more ▼] Electrical conduction through a molecule tethered by thiol bridges between two gold clusters is examined from a time-dependent point of view. The shortest electronic time scale for charge migration is a few femtoseconds transit, which is too swift for coupling to the nuclei, that proceeds by super exchange. An order of magnitude slower transfer occurs sequentially through the lower-in-energy sigma bonds. The electronic structure computations are performed at a high level ab initio density functional theory level where the external electric fields are included as part of the Hamiltonian. The structure computed includes the thiol bridge as well as the gold trimer at either end of the molecule. The results shown in detail are for the saturated dithiohexane -S-(CH2)(6)-S- bridge between the two gold trimers. [less ▲] Detailed reference viewed: 7 (1 ULg) The emergence of a coupled quantum dot array in a doped silicon nanowire gated by ultrahigh density top gate electrodes; ; et al in Journal Of Physical Chemistry c (2007), 111(48), 17852-17860 The electrical characteristics of Si nanowire gated by an array of very closely spaced nanowire gate electrodes are experimentally determined and theoretically modeled. Qualitative and quantitative ... [more ▼] The electrical characteristics of Si nanowire gated by an array of very closely spaced nanowire gate electrodes are experimentally determined and theoretically modeled. Qualitative and quantitative changes in the transport characteristics of these devices, as a function of gate-array voltage, are described. Experiments are reported for two widths of Si nanowires, 40 and 17 nm, and for a varying number of gate electrodes, all spaced at a pitch of 33 tim. We find that these top nanowire gate electrodes can be utilized to locally deplete the carriers in the underlying Si nanowire and thus define an array of coupled quantum dots along the nanowire. Reproducible Coulomb blockade is observed, and clear diamond features are obtained when the conductance is plotted in the plane of the source-drain and gate voltages. The regularity of the diamond diagrams is imposed by the regularity of the SNAP top gate electrodes. Model computations of the electronic structure starting from a tight-biding Hamiltonian in the atomic basis suggest that the control made possible by the top gate voltage induces the emergence (and reversible submergence) of a coupled quantum dot structure in an otherwise homogenously doped Si nanowire. [less ▲] Detailed reference viewed: 13 (2 ULg) Laser steered ultrafast quantum dynamics of electrons in LiH.Remacle, Françoise ; ; in Physical Review Letters (2007), 99(18), 183902 The response of the electronic system of LiH to a few-cycle strong field is computed by a time-dependent multiconfiguration method using a large, adaptive, basis set. The intensity, pulse duration ... [more ▼] The response of the electronic system of LiH to a few-cycle strong field is computed by a time-dependent multiconfiguration method using a large, adaptive, basis set. The intensity, pulse duration, polarization, and phase of carrier frequency can all be tuned to steer the motion of the electrons. It is shown possible to, e.g., direct the electrons to move along the Li-H bond or normal to it. By shifting the phase, the electrons can be driven toward the Li nucleus or away from it. When the pulse is polarized not along the bond the result is a rotation of the charge density. [less ▲] Detailed reference viewed: 10 (1 ULg) Probing ultrafast purely electronic charge migration in small peptidesRemacle, Françoise ; in Zeitschrift Fur Physikalische Chemie-International Journal Of Research In Physical Chemistry & Chemical Physics (2007), 221(5), 647-661 A pump-probe experiment that can examine a pure charge migration on a time scale short compared to the onset of nuclear motion is discussed. The mass spectrometric studies of Schlag et al. suggest that ... [more ▼] A pump-probe experiment that can examine a pure charge migration on a time scale short compared to the onset of nuclear motion is discussed. The mass spectrometric studies of Schlag et al. suggest that short peptide terminated by an aromatic amino acid are particularly suitable test compounds. The pump pulse needs to ionize the molecule on a time scale short compared to the period of the electronic motion, typically sub-fs. However, ionization occurs preferentially when the electrical field of the light is maximal so that the duration of the pulse envelope can be somewhat longer. Detection by photoelectron spectrometry of the peptide cation, to produce a dication, is shown to be able to probe the electronic rearrangement. [less ▲] Detailed reference viewed: 17 (6 ULg) The time scale for electronic reorganization upon sudden ionization of the water and water-methanol hydrogen bonded dimers and of the weakly bound NO dimerRemacle, Françoise ; in Journal of Chemical Physics (2006), 125(13), When the valence molecular orbital is localized sudden ionization can cause the nascent hole to move rapidly even before any relaxation of the geometry occurs. Hydrogen bonded clusters offer suitable test ... [more ▼] When the valence molecular orbital is localized sudden ionization can cause the nascent hole to move rapidly even before any relaxation of the geometry occurs. Hydrogen bonded clusters offer suitable test systems where the hole is initially localized on one moiety. Computational studies are reported for the water dimer and water-methanol bimer. The local ionization potential of water is different in the methanol-water and water-methanol conformers and this difference is very clearly reflected in the dynamics of charge migration. For the NO dimer the results are that its structure is symmetric so that the two NO molecules are equivalent and do not exhibit the required localization. The role of symmetry is also evident in the charge propagation for holes created in different orbitals. Localization of the initial hole distribution even if absent in the bare molecule can still be induced by the intense electric field of a sudden photoionization. This effect is computationally studied for the NO dimer in the presence of a static electric field. (c) 2006 American Institute of Physics. [less ▲] Detailed reference viewed: 7 (3 ULg) Electrical transport in saturated and conjugated molecular wiresRemacle, Françoise ; in Faraday Discussions (2006), 131 The mechanism for charge transport in dithio molecular wires tethered between two gold electrodes is investigated, using both a steady state and a time-dependent quantum mechanical approach. The interface ... [more ▼] The mechanism for charge transport in dithio molecular wires tethered between two gold electrodes is investigated, using both a steady state and a time-dependent quantum mechanical approach. The interface with the electrodes is modeled by two gold clusters and the electronic structure of the entire Au-n-S-bridge-S-Au-n system is computed ab initio at the DFT level and semi-empirically, with the extended Huckel theory. Current vs. applied bias, I-V, curves are computed using a scattering Landauer-type formalism in a steady state picture. The applied source-drain and gate voltages are included at the ab initio level in the electronic Hamiltonian and found to influence strongly the I-V characteristics. The time evolution of a non stationary electronic wave packet initially localized on a gold atom at one end of the extended system shows that charge transfer proceeds sequentially, by a hopping mechanism, to the opposite end. Analysis of the effective one electron Hamiltonian matrix shows that the sulfur atom endows a resistive character to the Au-C-S junctions. The S atoms are however rather well coupled to both the gold and carbon atoms so that typically the super exchange limit for electron transfer is not reached unless the molecular bridge is saturated and the Fermi window function is narrow. [less ▲] Detailed reference viewed: 6 (3 ULg) Molecule-based photonically switched half and full adderRemacle, Françoise ; ; in Journal of Physical Chemistry A (2006), 110(1), 177-184 A single molecule logic gate using electronically excited states and ionization/fragmentation can take advantage of the differences in cross-sections for one and two photon absorption. Fault tolerant ... [more ▼] A single molecule logic gate using electronically excited states and ionization/fragmentation can take advantage of the differences in cross-sections for one and two photon absorption. Fault tolerant optically pumped half adder and full adder are discussed as applications. A full adder requires two separate additions, and the logic concatenation that is required to implement this is physically achieved by an intramolecular transfer along the side chain of 2-phenylethyl-N,N-dimethylamine (PENNA). Solutions of the kinetic equations for the temporal evolution of the concentration of different states in the presence of time-varying laser fields are used to illustrate the high contrast ratios that are potentially possible for such devices. [less ▲] Detailed reference viewed: 11 (5 ULg) All-optical digital logic: Full addition or subtraction on a three-state systemRemacle, Françoise ; in Physical Review. A (2006), 73(3), Stimulated Raman adiabatic passage (STIRAP) is a well-studied pump-probe control scheme for manipulating the population of quantum states of atoms or molecules. By encoding the digits to be operated on as ... [more ▼] Stimulated Raman adiabatic passage (STIRAP) is a well-studied pump-probe control scheme for manipulating the population of quantum states of atoms or molecules. By encoding the digits to be operated on as "on" or "off" laser input signals we show how STIRAP can be used to implement a finite-state logic machine. The physical conditions required for an effective STIRAP operation are related to the physical conditions expected for a logic machine. In particular, a condition is derived on the mean number of photons that represent an on pulse. A finite-state machine computes Boolean expressions that depend both on the input and on the present state of the machine. With two input signals we show how to implement a full adder where the carry-in digit is stored in the state of the machine. Furthermore, we show that it is possible to store the carry-out digit as the next state and thereby return the machine to a state ready for the next full addition. Such a machine operates as a cyclical full adder. We further show how this full adder can equally well be operated as a full subtractor. To the best of our knowledge this is the first example of a nanosized system that implements a full subtraction. [less ▲] Detailed reference viewed: 11 (3 ULg) An electronic time scale in chemistryRemacle, Françoise ; in Proceedings of the National Academy of Sciences of the United States of America (2006), 103(18), 6793-6798 Ultrafast, subfemtosecond charge migration in small peptides is discussed on the basis of computational studies and compared with the selective bond dissociation after ionization as observed by Schlag and ... [more ▼] Ultrafast, subfemtosecond charge migration in small peptides is discussed on the basis of computational studies and compared with the selective bond dissociation after ionization as observed by Schlag and Weinkauf. The reported relaxation could be probed in real time if the removal of an electron could be achieved on the attosecond time scale. Then the mean field seen by an electron would be changing rapidly enough to initiate the migration. Tyrosine-terminated tetrapeptides have a particularly fast charge migration where in < 1 fs the charge arrives at the other end. A femtosecond pulse can be used to observe the somewhat slower relaxation induced by correlation between electrons of different spins. A slower relaxation also is indicated when removing a deeper-lying valence electron. When a chromophoric amino acid is at one end of the peptide, the charge can migrate all along the peptide backbone up to the N end, but site-selective ionization is probably easier to detect for tryptophan than for tyrosine. [less ▲] Detailed reference viewed: 9 (1 ULg) Thermometer ions for matrix-enhanced laser desorption/ionization internal energy calibrationGreisch, Jean-François ; Gabelica, Valérie ; Remacle, Françoise et alin Rapid Communications in Mass Spectrometry : RCM (2003), 17(16), 1847-1854 This work describes a method to use relative fragmentation yields to characterize the internal energy distribution of ions produced by matrix-enhanced laser desorption/ionization mass spectrometry (MELDI ... [more ▼] This work describes a method to use relative fragmentation yields to characterize the internal energy distribution of ions produced by matrix-enhanced laser desorption/ionization mass spectrometry (MELDI-MS, see: Wright LG, Cooks RG, Wood KL. Biomed. Mass Spectrom. 1985; 12:153162). Assuming that the fragmentation proceeds statistically and that the collisions in the source lead to a Boltzmann-like distribution of the internal energy, a characteristic parameter, the effective temperature, is introduced to describe the internal energy distribution of the ions observed. The hypotheses, advantages and drawbacks of the implementation of the method that uses substituted benzylpyridinium salts as thermometer ions are discussed. Use is made of two matrices that produce no matrix cations in MELDI and are suitable for small cationic salts. The actual value of this effective temperature significantly depends on an accurate determination of the threshold dissociation energies and on the time spent in the source, in addition to the statistical hypothesis itself. The method could be applied to normalize spectra in order to compare results issued from different instruments. [less ▲] Detailed reference viewed: 50 (1 ULg) Unimolecular reaction dynamics from kinetic energy release distributions.IV. Dissociation of the Pyridine ion.; Leyh, Bernard ; Remacle, Françoise ![]() in International Journal of Mass Spectrometry and Ion Processes (1999), 185-187 The kinetic energy release distribution (KERD) for the dissociation of the Pyridine ion into C4H4++HCN in the microsecond time window has been experimentally determined and theoretically analyzed by the ... [more ▼] The kinetic energy release distribution (KERD) for the dissociation of the Pyridine ion into C4H4++HCN in the microsecond time window has been experimentally determined and theoretically analyzed by the maximum entropy method. Less energy is channeled into the reaction coordinate than the statistical estimate because of the action of the "moentum gap law". The larger the value of the relative translational momentum of the fragments, the less efficient the exploration of phase space. the fraction of phase space efficiently sampled is estimated to be of the order of 75%. [less ▲] Detailed reference viewed: 9 (0 ULg) Unimolecular Reaction Dynamics from Kinetic Energy Release Distributions. 2. A Study of the Reaction C6H5Br+->C6H5++Br by the Maximum Entropy Method.; Remacle, Françoise ; Leyh, Bernard et alin Journal of Physical Chemistry (1996), 100(19), 8003-8007 The kinetic translational energy released in the unimolecular fragmentation reaction C6H5Br+->C6H5++Br has been experimentally studied in the microsecond time scale and theoretically analyzed by the ... [more ▼] The kinetic translational energy released in the unimolecular fragmentation reaction C6H5Br+->C6H5++Br has been experimentally studied in the microsecond time scale and theoretically analyzed by the maximum entropy formalism. The appropriate functional form relating the actual distribution to its prior distribution (eq.2.3) involves the square root of the kinetic energy (i.e. the momentum associated with the relative translational energy). A value of 0.26+/-0.02 eV is obtained by the entropy deficiency distribution at an internal energy of 0.85 eV above the reaction threshold. From this value, it can be concluded that 77% of the transition state phase space is efficiently sampled. [less ▲] Detailed reference viewed: 3 (0 ULg) Local decoupling of a bunch of resonances and associated trapping effectDesouter, Michèle ; Remacle, Françoise ![]() in Chemical Physics (1992), 164 Detailed reference viewed: 15 (0 ULg) Quantum effects in competitive decayRemacle, Françoise ; Desouter, Michèle ; in Chemical Physics (1991), 153 Trapping in competitive decay of degenerate statesRemacle, Françoise ; ; et alin Physical letters A (1990), 145 Detailed reference viewed: 2 (0 ULg) |
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