References of "De Pauw, Edwin"
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See detailFrom Valeriana officinalis to cancer therapy: the success of a bio-sourced compound
Hamaïdia, Malik ULiege; Barez, Pierre-Yves ULiege; Carpentier, Alexandre ULiege et al

in Biotechnologie, Agronomie, Société et Environnement = Biotechnology, Agronomy, Society and Environment (2016), 20

Over the centuries, bio-sourced compounds isolated from plants, insects and microorganisms have been a potent source of drugs for the treatment of human diseases. In this review, we recapitulate the story ... [more ▼]

Over the centuries, bio-sourced compounds isolated from plants, insects and microorganisms have been a potent source of drugs for the treatment of human diseases. In this review, we recapitulate the story of one of these compounds, 2-propylpentanoic acid, derived from the Valeriana officinalis flowering plant and its path to validation as a cancer treatment. [less ▲]

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See detailContribution of Capillary Electrophoresis and Ion Mobility Spectrometry to probe conformational change during desolvation
Far, Johann ULiege; Delvaux, Cédric ULiege; Kune, Christopher ULiege et al

Conference (2016, January 28)

The transfer of ions from the solution to the gas phase is a critical step to produce « native species ». Coming from a highly solvating medium, ionic species will tend to find a new equilibrium ... [more ▼]

The transfer of ions from the solution to the gas phase is a critical step to produce « native species ». Coming from a highly solvating medium, ionic species will tend to find a new equilibrium conformation in the gas phase. The pathway to reach the thermodynamically stable conformation involves crossing potential barriers of different heights. When these barriers are too high compared to the internal energy of the ions, it will result in “partial memories” (as structural preservation) of the conformation in solution. In order to evaluate the effect of the solvent evaporation and of the various collision processes encountered by the ions in the mass spectrometer, we developed two strategies: The first strategy consists in comparing in a single experiment the shape of the ions in solution and in the gas phase. Data are obtained by coupling Capillary Electrophoresis (CE) with Ion Mobility Mass Spectrometry (IMS). Drift times in solution and in the gas phase are directly compared. Deviations from their correlation points out changes in folding upon desolvatation. Preliminary results show that some of peptides issued from tryptic digest of BSA clearly change their conformation during desolvatation. The second strategy consists to monitor the shape of the different conformers observed for the intact cytochrome C during native runs in capillary electrophoresis and “native” ion mobility mass spectrometry, both using a physiological TRIS acetic pH7 buffer compared to a “MS friendly” ammonium acetate pH7 buffer. Finally as preliminary study, we proposed to use homopolymers for better understanding about the folding behavior in gas phase and the resulting shape of these ions using ion mobility spectrometry. [less ▲]

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See detailDe novo sequencing using MELD proteolysis coupled to a "sequence assembly" algorithm
Mazzucchelli, Gabriel ULiege; Zimmerman, Tyler A; Smargiasso, Nicolas ULiege et al

Poster (2016, January 22)

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See detailBiomarker for osteoarthritis and use thereof
Henrotin, Yves ULiege; Gharbi, Myriam; DEBERG, Michelle ULiege et al

Patent (2016)

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See detailEXPEL: A Novel Non-Destructive Method for Mining Soluble Tumor Biomarkers
Costanza, B; Blomme, A; Bellahcene, Akeila ULiege et al

in Acta Gastro-Enterologica Belgica (2016), 79(1), 11

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See detailMeasurement of emerging dechloranes in human serum using modulated gas chromatography coupled to electron capture negative ionization time-of-flight mass spectrometry
Brasseur, C; Pirard, C; L'Homme, B et al

in Rapid Communications in Mass Spectrometry (2016), 30

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See detailProtein N-glycosylation and N-glycan trimming are required for postembryonic development of the pest beetle Tribolium castaneum
Walski, Tomasz; Van Damme, Els; Smargiasso, Nicolas ULiege et al

in Scientific Reports (2016)

In holometabolous insects the transition from larva to adult requires a complete body reorganization and relies on N-glycosylated proteins. N-glycosylation is an important posttranslational modification ... [more ▼]

In holometabolous insects the transition from larva to adult requires a complete body reorganization and relies on N-glycosylated proteins. N-glycosylation is an important posttranslational modification that influences protein activity but its impact on the metamorphosis has not been studied yet. Here we used the red flour beetle, Tribolium castaneum, to perform a first comprehensive study on the involvement of the protein N-glycosylation pathway in metamorphosis. The transcript levels for genes encoding N-glycan processing enzymes increased during later developmental stages and, in turn, transition from larva to adult coincided with an enrichment of more extensively modified paucimannose glycans, including fucosylated ones. Blockage of N-glycan attachment resulted in larval mortality, while RNAi of α-glucosidases involved in early N-glycan trimming and quality control disrupted the larva to pupa transition. Additionally, simultaneous knockdown of multiple genes responsible for N-glycan processing towards paucimannose structures revealed their novel roles in pupal appendage formation and adult eclosion. Our findings revealed that, next to hormonal control, insect post-embryonic development and metamorphosis depend on protein N-glycan attachment and efficient N-glycan processing. Consequently, disruption of these processes could be an effective new approach for insect control. [less ▲]

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See detailIon Mobility-Mass Spectrometry as a Tool for the Structural Characterization of Peptides Bearing Intramolecular Disulfide Bond(s)
Massonnet, Philippe ULiege; Haler, Jean ULiege; Upert, Gregory et al

in Journal of the American Society for Mass Spectrometry (2016)

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See detailSphingolipids: promising lipid-class molecules with potential applications for industry. A review
Miazek, Krystian ULiege; Lebecque, Simon ULiege; Hamaïdia, Malik ULiege et al

in Biotechnologie, Agronomie, Société et Environnement = Biotechnology, Agronomy, Society and Environment (2016), (20(S1)), 321-336

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See detailIn Situ Analysis of Bacterial Lipopeptide Antibiotics by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging
Debois, Delphine ULiege; Ongena, Marc ULiege; Cawoy, H. et al

in Nonribosomal Peptide and Polyketide Biosynthesis : Methods and Protocols (2016)

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See detailIsolation and characterization of Ts19 Fragment II, a new long-chainpotassium channel toxin from Tityus serrulatus venom
Cerni, Felipe Augusto; Pucca, Manuela Berto; Amorim, Fernanda Gobbi et al

in Peptides (2016), 80

Ts19 Fragment II (Ts19 Frag-II) was first isolated from the venom of the scorpion Tityus serrulatus (Ts). It is aprotein presenting 49 amino acid residues, three disulfide bridges, Mr5534 Da and was ... [more ▼]

Ts19 Fragment II (Ts19 Frag-II) was first isolated from the venom of the scorpion Tityus serrulatus (Ts). It is aprotein presenting 49 amino acid residues, three disulfide bridges, Mr5534 Da and was classified as a newmember of class (subfamily) 2 of the -KTxs, the second one described for Ts scorpion. The -KTx familyis composed by two-domain peptides: N-terminal helical domain (NHD), with cytolytic activity, and aC-terminal CS domain (CCD), with Kv blocking activity. The extensive electrophysiological screening(16 Kv channels and 5 Nav channels) showed that Ts19 Frag-II presents a specific and significant blockingeffect on Kv1.2 (IC50value of 544 ± 32 nM). However, no cytolytic activity was observed with this toxin.We conclude that the absence of 9 amino acid residues from the N-terminal sequence (compared to Ts19Frag-I) is responsible for the absence of cytolytic activity. In order to prove this hypothesis, we synthesizedthe peptide with these 9 amino acid residues, called Ts19 Frag-III. As expected, Ts19 Frag-III showed tobe cytolytic and did not block the Kv1.2 channel. The post-translational modifications of Ts19 and itsfragments (I–III) are also discussed here. A mechanism of post-translational processing (post-splitting) issuggested to explain Ts19 fragments production. In addition to the discovery of this new toxin, this reportprovides further evidence for the existence of several compounds in the scorpion venom contributing tothe diversity of the venom arsenal. [less ▲]

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See detailProteomic landscapes of Pachycondila villosa ant venom by nano-scale chromatography and high resolution mass spectrometry
Cologna Takeno, Camila; Degueldre, Michel; Shibao, Priscilla et al

Poster (2016)

Introduction: It is estimated that the total number of molecules present in animal venoms is a collection of 40 million different compounds and, despite the efforts made, less than 0,01% of those ... [more ▼]

Introduction: It is estimated that the total number of molecules present in animal venoms is a collection of 40 million different compounds and, despite the efforts made, less than 0,01% of those compounds was identified and characterized to date. However, recent progresses in proteomic, in parallel with the advances of mass spectrometry have contributed to the study of those bio-libraries. The sensitivity improvement of these instruments allows the study of minimal amounts of sample still yielding a wealth of information. The present work aimed to perform a deep proteomic analysis of the venom from the ant Pachycondilyla villosa focusing on the de novo sequencing and the characterization of post translational modifications using high resolution mass spectrometers. Methods: The crude venom (0,5 ug) of P. villosa ants collected on Panga Natural Reserve (Uberlandia-Minas Gerais- Brazil) was diluted in 0,2% of formic acid and injected into a nanoACQUITY ULPC equipped with a monolithic PepSwift Capillary column 100µm x 25, hyphened to a Q Exactive Orbitrap mass spectrometer. The elution of the compounds was performed with a gradient of 3 to 50% of solution B in 80 minutes (A: H2O/FA 0.1%; B: ACN) at flow rate of 1 µL/min. All mass spectrometry analyses were performed in data dependent analysis (DDA) mode that automatically triggers the MS/MS experiments. The top 10 most intense peaks of each MS scan was fragmented by high-energy dissociation (HCD) and their corresponding MS/MS spectra were acquired. Preliminary data: Animal venoms are considered a rich source of biologically active compounds, which has been constantly selected and refined by the processes of natural evolution, in which each molecule is endowed with pharmacological properties highly valuable for scientific purposes. Despite the commitment, the exploration of these bio-libraries remains limited which might be related to the technological limitations that prevent full-scale investigation of these venoms. In addition, the conventional methods used to explore animal venoms are still time-consuming and require large amounts of samples, which restrict the studies for a few species. Unquestionably, the advances of proteomics and mass spectrometry instrumentations benefited a great deal the research on hymenoptera venom. Mostly due to their small size and therefore scarcely collected venom, this order has always been neglected and considered unfeasible to be studied through the known strategies. The present work represents the first report concerning the venom composition of P. villosa ant. The preliminary results already highlight the complexity of this venom, which showed to be composed by over 5000 different molecules. Most of those components fall into the 800- 4000 Da range, which is in agreement with other studies regarding ant´s venom composition. Most of the proteomics studies concerning ant venoms already revealed the presence of linear peptides below 5000 Da as major components. Those small peptides usually display antimicrobial activity and some of them hold additional insecticidal activity. Novel aspect: The results obtained already point out the biotechnological potential of P. villosa venom and highlight’s its complexity [less ▲]

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See detailForce measurements reveal how small binders perturb the dissociation mechanisms of DNA duplex sequences
Burmistrova, Anastasia; Fresch, Barbara ULiege; Sluysmans, Damien ULiege et al

in Nanoscale (2016), 8

The force-driven separation of double-stranded DNA is crucial to the accomplishment of cellular pro- cesses like genome transactions. Ligands binding to short DNA sequences can have a local stabilizing or ... [more ▼]

The force-driven separation of double-stranded DNA is crucial to the accomplishment of cellular pro- cesses like genome transactions. Ligands binding to short DNA sequences can have a local stabilizing or destabilizing effect and thus severely affect these processes. Although the design of ligands that bind to specific sequences is a field of intense research with promising biomedical applications, so far, their effect on the force-induced strand separation has remained elusive. Here, by means of AFM-based single mole- cule force spectroscopy, we show the co-existence of two different mechanisms for the separation of a short DNA duplex and demonstrate how they are perturbed by small binders. With the support of Mole- cular Dynamics simulations, we evidence that above a critical pulling rate one of the dissociation pathways becomes dominant, with a dramatic effect on the rupture forces. Around the critical threshold, we observe a drop of the most probable rupture forces for ligand-stabilized duplexes. Our results offer a deep understanding of how a stable DNA–ligand complex behaves under force-driven strand separation [less ▲]

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